View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_17 (Length: 372)
Name: NF19007_low_17
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_17 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 151 - 372
Target Start/End: Complemental strand, 44909107 - 44908874
Alignment:
| Q |
151 |
atggacttctctccttgccggcgatgacccaccgcactggaccgagcccgacgccgtctctctctctaagctctcccgcccttccccctttgcaactctc |
250 |
Q |
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|||||||||||||| | |||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
44909107 |
atggacttctctccctaccggcgatgacccaccacactgaaccgagcccgacgtcgtctctctctctaaactctctcgcccttccccctttgcaactctc |
44909008 |
T |
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| Q |
251 |
tcaaaattttgtgcttgcttcatggttcttctttctctatctcgtcctcaaccttacctctcttcgacgatgttg------------gcggaggacgata |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| |
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| T |
44909007 |
tcaaaattttgtgcttgcttcatggttcttctttctctatctcgtcctcaaccttacctctctttgacgatgttggcggtggtgaaggcggaggacaata |
44908908 |
T |
|
| Q |
339 |
ttgacagggggcggtgacagtaatattatctgtt |
372 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
44908907 |
ttgacaaggggcggtgacagtaatattatctgtt |
44908874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 151 - 262
Target Start/End: Original strand, 41534192 - 41534303
Alignment:
| Q |
151 |
atggacttctctccttgccggcgatgacccaccgcactggaccgagcccgacgccgtctctctctctaagctctcccgcccttccccctttgcaactctc |
250 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41534192 |
atggacttctctccctgccggcgatgacccaccgcactggaccgagcccgacgtcgtctctctctctaaactctcccgcccttccccctttgcaactcta |
41534291 |
T |
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| Q |
251 |
tcaaaattttgt |
262 |
Q |
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|||||||||||| |
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| T |
41534292 |
tcaaaattttgt |
41534303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 44909260 - 44909167
Alignment:
| Q |
1 |
tggtcactcacccaccaccagcacaaggtcactgtttttgtccaagctttctagccttcatattttaatattatctgtttactgattcacctca |
94 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44909260 |
tggtcactcacccaccaccagcacaaggtcactgtttttgtccaagctttctaaccttcatattttaatattatctgtttactgattcacctca |
44909167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41534043 - 41534135
Alignment:
| Q |
1 |
tggtcactcacccaccaccagcacaaggtcactgtttttgtccaagctttctagccttcatattttaatattatctgtttactgattcacctc |
93 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41534043 |
tggtcactcatccaccaccagcacaaggtcactgtttttgtccaagctttctagccttcatattttaatattatctgtttactgattcacctc |
41534135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 151 - 359
Target Start/End: Original strand, 49398720 - 49398940
Alignment:
| Q |
151 |
atggacttctctccttgccggcgatgacccaccgcactggaccgagcccgacgccgtctctctctctaagctctcccgcccttccccctttgcaactctc |
250 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49398720 |
atggacttctctccccgccgacgatgacccaccgcactggaccgagcccgacgccgtctctctctctaaactctcccgcccttccccctttgcaactctc |
49398819 |
T |
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| Q |
251 |
tcaaaattttgtgcttgcttcatggttcttctttctctatctcgtcctcaaccttacctctcttcgacgatgttggcg------------gaggacgata |
338 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |
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| T |
49398820 |
tcaaaattttatgcttgcttcatggttcttctttctctatctcgtccacaaccttacctctctttgacgatgttggcggtggtgaaggcagaggacgata |
49398919 |
T |
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| Q |
339 |
ttgacagggggcggtgacagt |
359 |
Q |
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||||||||||||||||||||| |
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| T |
49398920 |
ttgacagggggcggtgacagt |
49398940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 49398559 - 49398652
Alignment:
| Q |
1 |
tggtcactcacccaccaccagcacaaggtcactgtttttgtccaagctttctagccttcatattttaatattatctgtttactgattcacctca |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49398559 |
tggtcactcacccaccaccagcacaaggtcactgtttttgtccaagctttctagccttcatattttaatattatctatttactgattcacctca |
49398652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 35758549 - 35758599
Alignment:
| Q |
1 |
tggtcactcacccaccaccagcacaaggtcactgtttttgtccaagctttc |
51 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
35758549 |
tggtcactcacccaccaccagcacaacgtcactatttttgtccaagctttc |
35758599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41348834 - 41348784
Alignment:
| Q |
1 |
tggtcactcacccaccaccagcacaaggtcactgtttttgtccaagctttc |
51 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
41348834 |
tggtcactcacccaccaccaacacaaggtcactgaatttgtccaagctttc |
41348784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40450878 - 40450831
Alignment:
| Q |
1 |
tggtcactcacccaccaccagcacaaggtcactgtttttgtccaagct |
48 |
Q |
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||||||||||||||||||||||| |||| |||||||| ||||||||| |
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| T |
40450878 |
tggtcactcacccaccaccagcataaggccactgtttccgtccaagct |
40450831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 29920878 - 29920921
Alignment:
| Q |
8 |
tcacccaccaccagcacaaggtcactgtttttgtccaagctttc |
51 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
29920878 |
tcacccaccaccagcacaaggtcactgtatttgtccaaactttc |
29920921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36391106 - 36391147
Alignment:
| Q |
1 |
tggtcactcacccaccaccagcacaaggtcactgtttttgtc |
42 |
Q |
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||||||||||||||||||||||| |||| |||||||| |||| |
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| T |
36391106 |
tggtcactcacccaccaccagcataaggccactgtttctgtc |
36391147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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