View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_18 (Length: 366)
Name: NF19007_low_18
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 37102609 - 37102942
Alignment:
| Q |
9 |
gaagaatattcatagaatcaaattaaaagtagcataaatgtacctgaaatcaactgaaattaggtcccttaatatagttgtgatggcttgagatcaatat |
108 |
Q |
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| T |
37102609 |
gaagaatattcatagaatcaaattaaaagtagcataaatgtacctgaaatcaacagaaattaggtcccttaatatagttgtgatggcttgagatcaatat |
37102708 |
T |
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| Q |
109 |
atggaagggacactgcactttgatgcttcaaaccaaggtaatatttccttcaaagatgttaaatttcagcattaatttctacaatcaaagactctctatg |
208 |
Q |
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| T |
37102709 |
atggaagggacactgcactttgatgcttcaaaccaaggtaatatttccttcaaagatgttaaatttcagcattaatttctacaatcaaagactctctatg |
37102808 |
T |
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| Q |
209 |
aacaataacctaaaccaaaccaatttaaatcatcaaataaaattgtgtcactttggttgttctagagatatttaagaattgagatcatgaaaggagtggc |
308 |
Q |
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| T |
37102809 |
aacaataacctaaaccaaaccaatttaaatcatcaaataaaattgtgtcactttggttgttctagagatatttaagaattgagatcatgaaaggagtggc |
37102908 |
T |
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| Q |
309 |
ctagaaaagaaagtttcctttaatttgttttttc |
342 |
Q |
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| T |
37102909 |
ctagaaaagaaagtttcctttaatttgttttttc |
37102942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 1951635 - 1951586
Alignment:
| Q |
13 |
aatattcatagaatcaaattaaaagtagcataaatgtacctgaaatcaac |
62 |
Q |
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|||||||| | |||||||||||||||||||||||||||| |||||||||| |
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| T |
1951635 |
aatattcagaaaatcaaattaaaagtagcataaatgtacatgaaatcaac |
1951586 |
T |
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