View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19007_low_2 (Length: 611)
Name: NF19007_low_2
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 11 - 593
Target Start/End: Original strand, 6236083 - 6236665
Alignment:
| Q |
11 |
catcatcatcaatgtatcacaattatcatatcactttctctannnnnnnna----tttatttatatcttgggtgtagaatgggtgtttgtgtctacgtag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6236083 |
catcatcatcaatgtatcacaattatcatatcactttctctatttttttttaatttttttttatatcttgggtgtagaatgggtgtttgtgtctacgtag |
6236182 |
T |
|
| Q |
107 |
attattttcctaatcaatgtcactatgttttttgatttataagaacgaaatgaagaagaaataacacaaaaggtaaacacatccatatctacagggctca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6236183 |
attattttcctaatcaatgtcactatgttttttgatttataagaacgaaatgaacaagaaataacacaaaaggtaaacacatccatatctacagggctca |
6236282 |
T |
|
| Q |
207 |
ctgcatatagtagtagtactagttctttgacatgatgtttgttcaccggtcaaggcaataatatcatggtgtttctaaattatagtgttcccacattcaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6236283 |
ctgcatatagtagtagtactagttctttgacatgatgtttgttcactggtcaaggcaat-atatcatggtgtttctaaattttagtgttcccacattcaa |
6236381 |
T |
|
| Q |
307 |
caaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaaatctaannnnnnnnnnnn |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6236382 |
caaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaaatctaatttttttttttt |
6236481 |
T |
|
| Q |
407 |
nnngatcaagcgaagaaattcaataaaactagagagggccagaacccataacaaggtctacatcaggaagaaacaaaaacagaaaaggcagaattacatc |
506 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6236482 |
t---atcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaagtctacatcaggaagaaacaaaaatagaaaaggcagaattacatc |
6236578 |
T |
|
| Q |
507 |
aaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagctgggtggtgagatcctccattgagaagag |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6236579 |
aaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagcagggtggtgagatcctccattgagaagag |
6236665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 6240344 - 6240435
Alignment:
| Q |
106 |
gattattttcctaatcaatgtcactatgttttttgatttata-agaacgaaatgaagaagaaataacacaaaaggtaaacacatccatatct |
196 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| | || ||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
6240344 |
gattattttcctaatcaacatcactatgttttttgatttatatacaaacaaatgaacatgaaataacacaaaaggtaaacacatccatatct |
6240435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 394
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
289 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
388 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
|
|
| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
|
| Q |
389 |
atctaa |
394 |
Q |
| |
|
|||||| |
|
|
| T |
33891812 |
atctaa |
33891807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 394
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
289 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
388 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
|
|
| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
|
| Q |
389 |
atctaa |
394 |
Q |
| |
|
|||||| |
|
|
| T |
33952436 |
atctaa |
33952441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University