View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_20 (Length: 358)
Name: NF19007_low_20
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 38609171 - 38608806
Alignment:
| Q |
1 |
tcgtcagtttatcaagttatatgaggcacattgctctttgtttgtgtgtcatatattattcgtaggttcaggtatcgttcaaagtactgtcacaatatgg |
100 |
Q |
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| T |
38609171 |
tcgtcagtttatcaagttatatgagtcacattgctctttgtttgtgtgtcatatattatttgtaggttcaggtatcgttcaaagtactgtcacaatatgg |
38609072 |
T |
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| Q |
101 |
tttgttatactt-ttgcaaatgatactcgtgttttggtgacattttggtatgcattggcaaataagggtcttgttgatta--------gctctctatgga |
191 |
Q |
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| T |
38609071 |
tttgtgatactgattgccaatgatactcgtgctttggtgacattttggtatgtattggcaaataagggttttgttgattatttgattagctctgtatgga |
38608972 |
T |
|
| Q |
192 |
tatgctacgttgttcnnnnnnncctagtagttatttattctcatatcgtttcttaggttgcatatattgagggtgacttgtttaaaccgaacactgtatg |
291 |
Q |
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| T |
38608971 |
tatgctacgttgttctttttttcctagtagttatttattctcatatcgtttcttaggttgcatatattgagggtgacttgtttaaaccgaacaatgtatg |
38608872 |
T |
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| Q |
292 |
ttctagttaggttgcatgtgatgaggctggctggcttgtttaaactaaggaatgtacgttctagtt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608871 |
ttctagttaggttgcatgtgatgaggctggctggcttgtttaaactaaggaatgtacgttctagtt |
38608806 |
T |
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