View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19007_low_21 (Length: 357)

Name: NF19007_low_21
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19007_low_21
NF19007_low_21
[»] chr2 (6 HSPs)
chr2 (1-348)||(17902856-17903204)
chr2 (4-92)||(39648250-39648338)
chr2 (206-240)||(17871869-17871903)
chr2 (29-87)||(26423241-26423299)
chr2 (206-243)||(17825623-17825660)
chr2 (5-74)||(26999276-26999345)
[»] chr3 (9 HSPs)
chr3 (3-185)||(26678101-26678287)
chr3 (1-207)||(31637574-31637784)
chr3 (1-195)||(6999430-6999628)
chr3 (1-74)||(32463727-32463800)
chr3 (129-203)||(25177956-25178030)
chr3 (114-192)||(32463341-32463418)
chr3 (4-92)||(12723462-12723550)
chr3 (4-92)||(16932969-16933057)
chr3 (99-187)||(26682393-26682480)
[»] chr4 (4 HSPs)
chr4 (1-199)||(6682751-6682953)
chr4 (6-92)||(36480851-36480937)
chr4 (30-92)||(48254987-48255049)
chr4 (39-92)||(33037145-33037198)
[»] chr1 (3 HSPs)
chr1 (1-195)||(35322324-35322522)
chr1 (39-92)||(14585864-14585917)
chr1 (6-92)||(33737550-33737636)
[»] chr5 (1 HSPs)
chr5 (1-206)||(33304910-33305119)
[»] chr6 (3 HSPs)
chr6 (1-206)||(13997137-13997346)
chr6 (4-92)||(330179-330267)
chr6 (1-58)||(1856238-1856295)
[»] scaffold0233 (1 HSPs)
scaffold0233 (3-187)||(19246-19435)
[»] chr7 (2 HSPs)
chr7 (129-182)||(36065829-36065882)
chr7 (39-92)||(48207533-48207586)
[»] scaffold1476 (1 HSPs)
scaffold1476 (130-171)||(1250-1291)
[»] scaffold0479 (1 HSPs)
scaffold0479 (4-92)||(10795-10883)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 17902856 - 17903204
Alignment:
Q  1 tcaatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagtttaagaagtac 100  Q
    |||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  17902856 tcaatgattgtagacacttgttagaaactgatttaatgaacttggatgtgaagtttattaggagacaagtcaatggtgttgcccatagtttaggaagtac 17902955  T
Q  101 cacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttccttcaaaacaaat 200  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  17902956 cacataatgctagtttccagatttatcta-aacattccacattgtatttctactttgaccaataataaaaatttataaacttatttccttcaaaacaaat 17903054  T
Q  201 aaaaaataaaggatactctatcaaataacttcaatggtttgattgct--nnnnnnnnttcaagagtttcatctagtagtaaaaacctgactttgaatttg 298  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||          |||||| |||| ||||||||||||||| ||||||||||||| |    
T  17903055 aaaaaataaaggatactctaacaaataacttcaatggtttgattgctaaaaaaaaaattcaagggtttgatctagtagtaaaaatctgactttgaattcg 17903154  T
Q  299 aaggttctgattttcaaccccactactgtaaaatcatttatcagtattat 348  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||    
T  17903155 aaggttctaactttcaaccccactactgtaaaatcatttatcagtattat 17903204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 39648250 - 39648338
Alignment:
Q  4 atgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||||||||||||||||||   | |||||||  |||||| ||||||||||| || |||||||| | |||| |||||| ||||||||||    
T  39648250 atgattgtagacacttgttgatgactgatttagcgaactcagatgtgaagttcatcaagagacaggccaatagtgttgcccatagttta 39648338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 17871869 - 17871903
Alignment:
Q  206 ataaaggatactctatcaaataacttcaatggttt 240  Q
    ||||||||||||||||||||||||||||| |||||    
T  17871869 ataaaggatactctatcaaataacttcaagggttt 17871903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 26423241 - 26423299
Alignment:
Q  29 tgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccata 87  Q
    ||||||| ||||||| ||||||||||| |||| |||||||| |||| |||||| |||||    
T  26423241 tgatttagtgaactctgatgtgaagttcattaggagacaagccaatagtgttgcccata 26423299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 17825623 - 17825660
Alignment:
Q  206 ataaaggatactctatcaaataacttcaatggtttgat 243  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  17825623 ataaaggatattctatcaaataacttcaagggtttgat 17825660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 26999345 - 26999276
Alignment:
Q  5 tgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaat 74  Q
    |||||||||||||||||||   ||||||||| ||||||| ||| ||||||| ||||  ||||||| ||||    
T  26999345 tgattgtagacacttgttgatgattgatttagtgaactctgatttgaagttcattagaagacaagccaat 26999276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 26678287 - 26678101
Alignment:
Q  3 aatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagt-----ttaagaag 97  Q
    ||||||||||||||||| |||| || |||| ||| |||||||||||| ||||| |||| |||||||| ||||||||||| |||||||     | ||||||    
T  26678287 aatgattgtagacacttattggaaactgatctaacgaactcggatgtaaagttcattaggagacaagccaatggtgttgcccatagtctagataaagaag 26678188  T
Q  98 taccacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatt 185  Q
     |||| ||||| |||||||||| |||||||   ||||||||||||| |||||||||||||| |||||||| |||  ||||||||||||    
T  26678187 caccatataatactagtttccatatttatc-gcaacattccacattgtatttctactttgatcaataatggaaagctataagcttatt 26678101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 31637574 - 31637784
Alignment:
Q  1 tcaatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttt-----aaga 95  Q
    ||||||||||||||||||||||| | |  |||||| ||||||| ||||||||||| |||| ||||||||||||||||||||  ||||||||     | ||    
T  31637574 tcaatgattgtagacacttgttgagtaccgatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttagctaagga 31637673  T
Q  96 agtaccacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttccttcaaaa 195  Q
    || || |||  | |||||| |||| ||| ||| ||||||||||||||| ||||||| |||||| ||||||||||||  ||||||||| ||||| ||||||    
T  31637674 agcactacaccacgctagtctccacattcatc-ttaacattccacattgtatttcttctttgatcaataatgaaaagctataagcttctttccgtcaaaa 31637772  T
Q  196 caaataaaaaat 207  Q
     ||| |||||||    
T  31637773 aaaaaaaaaaat 31637784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 6999628 - 6999430
Alignment:
Q  1 tcaatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttt-----aaga 95  Q
    ||||||||||||||||||||||| | |   ||||| ||||||| ||||||||||| |||| |||||||||||||||||| |  ||||||||     | ||    
T  6999628 tcaatgattgtagacacttgttgagtaccaatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgtggctcatagtttagctaagga 6999529  T
Q  96 agtaccacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttccttcaaaa 195  Q
    || || |||  | |||||| |||| |||  || ||||||||||||||| ||||||| |||||| ||||||||||||  ||||||||| ||||| ||||||    
T  6999528 agcactacaccacgctagtctccacattcgtc-ttaacattccacattgtatttcttctttgatcaataatgaaaagctataagcttctttccgtcaaaa 6999430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32463800 - 32463727
Alignment:
Q  1 tcaatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaat 74  Q
    ||||||||||||||||||||||||||| |||||||| |||||  |||||||||||||||| |||||||| ||||    
T  32463800 tcaatgattgtagacacttgttgggaactgatttaacgaactatgatgtgaagtttattaggagacaagccaat 32463727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 25177956 - 25178030
Alignment:
Q  129 ttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttccttcaaaacaaataaa 203  Q
    ||||||||||||||| |||||||||||||| ||||||||||||  ||||||||| ||||| |||||| |||||||    
T  25177956 ttaacattccacattgtatttctactttgatcaataatgaaaagctataagcttctttccgtcaaaaaaaataaa 25178030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 32463418 - 32463341
Alignment:
Q  114 tttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttccttca 192  Q
    |||||| ||||||||| |||| ||| |||| |||||||||||||| | ||||||||||  ||||||||||||| |||||    
T  32463418 tttccaaatttatctt-aacactcctcattgtatttctactttgatccataatgaaaacctataagcttattttcttca 32463341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 12723550 - 12723462
Alignment:
Q  4 atgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||||||||||||||||||   |  |||||||| ||||| |||||||  || |||| |||| || |||||||||||| ||||||||||    
T  12723550 atgattgtagacacttgttgatgaccgatttaataaactctgatgtgagtttaattaggagataaatcaatggtgttgcccatagttta 12723462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 16933057 - 16932969
Alignment:
Q  4 atgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||||||||||||||| ||   |  |||||||  ||||| |||||||  || |||| |||||||| ||||||||||| ||||||||||    
T  16933057 atgattgtagacacttgctgatgaccgatttaacaaactctgatgtgagtttaattaggagacaagccaatggtgttgcccatagttta 16932969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 26682393 - 26682480
Alignment:
Q  99 accacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttc 187  Q
    |||| ||||||||||||| || |||||||   || |||| ||||||||||||| |||||| ||||||||| ||   |||||||||||||    
T  26682393 accatataatgctagttttcatatttatcac-aatattctacattatatttctgctttgatcaataatgagaagcaataagcttatttc 26682480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 6682751 - 6682953
Alignment:
Q  1 tcaatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttt-----aaga 95  Q
    ||||||||||||||||||||||| | |  |||||| ||||||| ||||| ||||| |||| ||||||||||||||||||||  ||||||||     | ||    
T  6682751 tcaatgattgtagacacttgttgagtaccgatttagtgaactctgatgtaaagttcattaggagacaagtcaatggtgttgctcatagtttagctaagga 6682850  T
Q  96 agtaccacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttccttcaaaa 195  Q
    || || |||  | |||||| |||| ||| ||| ||||||||||||||| ||||||| |||||| ||||||||||||  ||||||||| ||||| ||||||    
T  6682851 agcactacaccacgctagtctccacattcatc-ttaacattccacattgtatttcttctttgatcaataatgaaaagctataagcttctttccgtcaaaa 6682949  T
Q  196 caaa 199  Q
    ||||    
T  6682950 caaa 6682953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 36480937 - 36480851
Alignment:
Q  6 gattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||||||||||||||||   |  |||||| | ||||| |||||||  || |||| |||||||| ||||||||||| ||||||||||    
T  36480937 gattgtagacacttgttgatgaccgatttagtaaactctgatgtgagtttcattaggagacaagccaatggtgttgcccatagttta 36480851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 48254987 - 48255049
Alignment:
Q  30 gatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    |||||| | ||||| |||||||  ||||||| |||||||| ||||||||||| ||||||||||    
T  48254987 gatttagtaaactctgatgtgagttttattaggagacaagccaatggtgttgcccatagttta 48255049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 33037198 - 33037145
Alignment:
Q  39 aactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||| |||||||||||||||| |||||||  |||| |||||| ||||||||||    
T  33037198 aactctgatgtgaagtttattaggagacaaaccaatagtgttgcccatagttta 33037145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 35322324 - 35322522
Alignment:
Q  1 tcaatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttt-----aaga 95  Q
    ||||||||||||||||||||||| | |  |||||| ||||||| ||||||||||| |||| ||||||||||||||||||||  ||||||||     | ||    
T  35322324 tcaatgattgtagacacttgttgagtaccgatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttagctaagga 35322423  T
Q  96 agtaccacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttccttcaaaa 195  Q
    || || |||  | |||||| |||| ||| ||| ||||||||||||||| ||||||| |||||| ||||||||||||  ||||||||| ||||| ||||||    
T  35322424 agcactacaccacgctagtctccacattcatc-ttaacattccacattgtatttcttctttgatcaataatgaaaagctataagcttctttccgtcaaaa 35322522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 14585864 - 14585917
Alignment:
Q  39 aactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||| |||||||| ||||||| |||||||| ||||||||||| ||||||||||    
T  14585864 aactctgatgtgaattttattaggagacaagccaatggtgttgcccatagttta 14585917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 33737636 - 33737550
Alignment:
Q  6 gattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||||||||||||||||   |  |||||| | ||||| |||||||  || |||| |||||||| ||||||||||| ||||||||||    
T  33737636 gattgtagacacttgttgatgaccgatttagtaaactctgatgtgagtttcattaggagacaagccaatggtgttgcccatagttta 33737550  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 33305119 - 33304910
Alignment:
Q  1 tcaatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttt-----aaga 95  Q
    ||||||||||||||||||||||| | |  |||||| ||||||| ||||||||||| |||| ||||||||||||||||||||  ||||||||     | ||    
T  33305119 tcaatgattgtagacacttgttgagtaccgatttagtgaactctgatgtgaagttcattaggagacaagtcaatggtgttgctcatagtttagctaagga 33305020  T
Q  96 agtaccacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttccttcaaaa 195  Q
    || || |||  | |||||| |||| ||| ||| ||||||||||||||| ||||||| |||||| ||||||||||||  ||||||||| ||||| | ||||    
T  33305019 agcactacaccacgctagtctccacattcatc-ttaacattccacattgtatttcttctttgatcaataatgaaaagctataagcttctttccgttaaaa 33304921  T
Q  196 caaataaaaaa 206  Q
     ||| ||||||    
T  33304920 aaaaaaaaaaa 33304910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 13997346 - 13997137
Alignment:
Q  1 tcaatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttt-----aaga 95  Q
    ||||||||||||||||||||||| | |  |||||| ||||||| ||||| ||||| |||| ||||||||||||||||||||  ||||||||     | ||    
T  13997346 tcaatgattgtagacacttgttgagtaccgatttagtgaactctgatgttaagttcattaggagacaagtcaatggtgttgctcatagtttagctaagga 13997247  T
Q  96 agtaccacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttccttcaaaa 195  Q
    || || |||  | |||||| |||| ||| ||| ||||||||||||||| ||||| | |||||| ||||||||||||  ||||||||| ||||| ||||||    
T  13997246 agcactacaccacgctagtctccacattcatc-ttaacattccacattgtatttattctttgatcaataatgaaaagctataagcttctttccgtcaaaa 13997148  T
Q  196 caaataaaaaa 206  Q
     ||| ||||||    
T  13997147 aaaaaaaaaaa 13997137  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 330179 - 330267
Alignment:
Q  4 atgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||||||||||||||||||   |  || ||| | ||||| |||||||  ||||||| |||||||| ||||||||||| ||||||||||    
T  330179 atgattgtagacacttgttgatgaccgacttagtaaactctgatgtgagttttattaggagacaagccaatggtgttgcccatagttta 330267  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 1856295 - 1856238
Alignment:
Q  1 tcaatgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttat 58  Q
    |||| ||||||||||| |||||||  | ||||||||| ||||| ||||||||||||||    
T  1856295 tcaaagattgtagacaattgttggtcactgatttaataaactctgatgtgaagtttat 1856238  T

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Target: scaffold0233 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 19435 - 19246
Alignment:
Q  3 aatgattgtagacacttgttgggaattgatttaatgaa-ctcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagtttaa-----gaa 96  Q
    |||||||||||||||||||||   | ||||||| |||| ||| ||||||||||| |||| ||||||||||||||||||||   |||||||||     |||    
T  19435 aatgattgtagacacttgttgaatactgatttagtgaaactctgatgtgaagttcattaggagacaagtcaatggtgttgcttatagtttaactaaggaa 19336  T
Q  97 gtaccacataatgctagtttccagatttatctttaacattccacattatatttctactttgaccaataatgaaaatttataagcttatttc 187  Q
    | || |||  |  ||||| |||| ||| ||| |||| |||||||||| |||| ||||||||| ||||||||||||  ||||||||| ||||    
T  19335 gcacaacaccacactagtctccacattcatc-ttaatattccacattgtattcctactttgatcaataatgaaaagctataagcttctttc 19246  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 36065829 - 36065882
Alignment:
Q  129 ttaacattccacattatatttctactttgaccaataatgaaaatttataagctt 182  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||  |||||||||    
T  36065829 ttaacattctacattatattactactttgatcaataatgaaaaggtataagctt 36065882  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 48207533 - 48207586
Alignment:
Q  39 aactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||| |||||||  ||||||| |||||||| ||||||||||| ||||||||||    
T  48207533 aactctgatgtgagttttattaggagacaagccaatggtgttgcccatagttta 48207586  T

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Target: scaffold1476 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 1291 - 1250
Alignment:
Q  130 taacattccacattatatttctactttgaccaataatgaaaa 171  Q
    |||||||||||||| ||||||||||||||  |||||||||||    
T  1291 taacattccacattgtatttctactttgattaataatgaaaa 1250  T

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Target: scaffold0479 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 10795 - 10883
Alignment:
Q  4 atgattgtagacacttgttgggaattgatttaatgaactcggatgtgaagtttattaagagacaagtcaatggtgttgtccatagttta 92  Q
    ||||||||||||||||||||   |  |||||||  ||||| |||||||  || |||| |||||||| |||| |||||| ||||||||||    
T  10795 atgattgtagacacttgttgatgaccgatttaacaaactctgatgtgagtttaattaggagacaagccaatcgtgttgcccatagttta 10883  T

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