View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_22 (Length: 355)
Name: NF19007_low_22
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 22360522 - 22360860
Alignment:
| Q |
17 |
acattacaggccaatcaaagttccatataaatggaactcatctagtgtgatgtatgaggagcacccaattaaacaaaagagacattatcctggaaatcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22360522 |
acattacaggccaatcaaagttccatataaatggaactcatctagtgtgatgtatgaggagcacccaattaaacaaaagagacattatcctggaaatcaa |
22360621 |
T |
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| Q |
117 |
tcttttgatttccaggataatgggtactcaagaagagtcacatccccggaaacaatcagtattgaatccaattcatatcaaagcatcaaagtatcatcca |
216 |
Q |
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| T |
22360622 |
tcttttgatttccaggataatgggtactcaagaagagtcacatccccggaaacaatcagtgttgaatccaattcatatcaaagcatcaaagtatcatcca |
22360721 |
T |
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| Q |
217 |
catatgattgggaactcagtcccccattttctgccgtctctggagtttgtcaagagcctgagccaaaatcatcggttcatgatcatgcgcttccagaact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22360722 |
catatgattgggaactcagtcccccattttctgccgtctctggagtttgtcaagagcctgagccaaaatcatcggttcatgatcatgcgcttccagaact |
22360821 |
T |
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| Q |
317 |
agttatagagcaggatgatgatgaagatgaggacgaagt |
355 |
Q |
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| T |
22360822 |
agttatagagcaggatgatgatgaagatgaggacgaagt |
22360860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 54306937 - 54306861
Alignment:
| Q |
23 |
caggccaatcaaagttccatataaatggaactcatctagtgtgatgtatgaggagcacccaattaaacaaaagagac |
99 |
Q |
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| T |
54306937 |
caggccaatcgaagtcccatgtaaatggaactcatccattgtgttgcatgaggagcacccaattaaacaaaagagac |
54306861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 346
Target Start/End: Complemental strand, 54306738 - 54306617
Alignment:
| Q |
225 |
tgggaactcagtcccccattttctgccgtctctggagtttgtcaagagcctgagccaaaatcatcggttcatgatcatgcgcttccagaactagttatag |
324 |
Q |
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|||||| |||||||||||| |||| | || ||||||||| ||||||||| ||| |||||||| | ||||| |||||| |||||| |||||||||||| |
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| T |
54306738 |
tgggaattcagtcccccatgttcttctgtttctggagttagtcaagagcttgatccaaaatcttatgttcacaatcatgtgcttcccaaactagttatag |
54306639 |
T |
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| Q |
325 |
agcaggatgatgatgaagatga |
346 |
Q |
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|||| ||||| ||||| ||||| |
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| T |
54306638 |
agcaagatgacgatgatgatga |
54306617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 54306805 - 54306738
Alignment:
| Q |
129 |
caggataatgggtactcaagaagagtcacat--ccccggaaacaatcagtattgaatccaattcatat |
194 |
Q |
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|||||| ||| |||||||||||||||||||| |||| |||||||| ||| ||||||||||||||||| |
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| T |
54306805 |
caggattatgagtactcaagaagagtcacatccccccagaaacaattagtgttgaatccaattcatat |
54306738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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