View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_24 (Length: 342)
Name: NF19007_low_24
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 14347097 - 14347416
Alignment:
| Q |
4 |
atgtcgaagaatatgatggaagagcttttagagccaacaaagaaagagggcacaagccatgtgactcttaatgctgtcccttctgtgtttaaggataata |
103 |
Q |
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| T |
14347097 |
atgtcgaagaaaaggatggaagagcttttagagccaacaaagaaagagggcacaagccatgtgactcttaatgctgtcccttctgtgtttaaggataata |
14347196 |
T |
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| Q |
104 |
tagctgaggctgttccactttcaactacatttgttgtctctacttctaaagctcctaccaacacttacacttcatgggcggagcatcttagggagtttga |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14347197 |
tagctgaggctgttccacttgcaactacatttgttgtctctacttctaaagctcctaccaacacttgcacttcatgggcggagcatcttagggagtttga |
14347296 |
T |
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| Q |
204 |
caaaggtgaggactcattatggaatttgtccatcgatcgatctaacatcgtagatgagcatataatgcgtccaactgacgaagcaaaatttgctagagct |
303 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14347297 |
caaaggtgaggactcattgtggaatttgtccatcgatcgatctaacatcatagatgagcatataatgcgtccaactgacgaagcaaaatttgctagagct |
14347396 |
T |
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| Q |
304 |
ggggatattggtgtttgcaa |
323 |
Q |
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|||||||||||||||||||| |
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| T |
14347397 |
ggggatattggtgtttgcaa |
14347416 |
T |
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