View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19007_low_25 (Length: 338)

Name: NF19007_low_25
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19007_low_25
NF19007_low_25
[»] chr5 (8 HSPs)
chr5 (10-338)||(11901309-11901637)
chr5 (10-338)||(12039664-12039992)
chr5 (10-175)||(11861038-11861203)
chr5 (10-175)||(11828906-11829071)
chr5 (232-337)||(11860897-11861002)
chr5 (232-338)||(11828764-11828870)
chr5 (33-171)||(11732735-11732876)
chr5 (232-338)||(11732568-11732674)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 11901309 - 11901637
Alignment:
Q  10 catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11901309 catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca 11901408  T
Q  110 aatctcatttttccaccaacttttcagattaggacaatccgagattgtaagttccttcaaggatggnnnnnnnnntattgctgtagtagaggaaggggta 209  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||         |||||  |||||||||||||||| |    
T  11901409 aatctcattttcccaccaacttttcagattaggacaatccgaaattgtaagttccttcaaggatggaaaaaacaatattggggtagtagaggaaggggaa 11901508  T
Q  210 ttaccaacttgannnnnnncttcaatgaatttcagagagtccagtctccgaagttggagaaccttgagatgtggaagctgatccattggggggagaaact 309  Q
    ||||||||||||       || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11901509 ttaccaacttgattgttttctgcaatgaatttcagagagtccagtctccgaatttggagaaccttgagatgtggaagctgatccattggggggagaaact 11901608  T
Q  310 cgcatttgggacagtcgttcaaggtaaac 338  Q
    |||||||||||||||||||||||||||||    
T  11901609 cgcatttgggacagtcgttcaaggtaaac 11901637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 12039992 - 12039664
Alignment:
Q  10 catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca 109  Q
    |||||||||||  ||||||||| |||||||||||||| || || ||| ||||||  |||||||| ||||||||||||||| |||||||||||||| ||||    
T  12039992 catcatcaagattaggatatagtggcatgcaagctaacttggggcaatattggacatttagtttggaaatgcaactgaaagatggtctatcattatccca 12039893  T
Q  110 aatctcatttttccaccaacttttcagattaggacaatccgagattgtaagttccttcaaggatggnnnnnnnnntattgctgtagtagaggaaggggta 209  Q
     |||||| ||| ||||||||| || ||||| |||||||||||||||||||||||||||||||||||         ||||| ||||||| ||||||||  |    
T  12039892 tatctcagtttcccaccaactgtttagatttggacaatccgagattgtaagttccttcaaggatggaaaaaataatattggtgtagtaaaggaagggaaa 12039793  T
Q  210 ttaccaacttgannnnnnncttcaatgaatttcagagagtccagtctccgaagttggagaaccttgagatgtggaagctgatccattggggggagaaact 309  Q
    ||||||||||||        | ||||||||||||| |||||||  || ||||||||||||||||||||||||||||||| ||||||||| |||||||| |    
T  12039792 ttaccaacttgattgttttttgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaatt 12039693  T
Q  310 cgcatttgggacagtcgttcaaggtaaac 338  Q
    ||||||| || ||||| ||||||||||||    
T  12039692 cgcattttgggcagtcattcaaggtaaac 12039664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 11861203 - 11861038
Alignment:
Q  10 catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca 109  Q
    ||||||||||||| |||||||| |||||| ||||||| | ||||||| ||||||| ||||| |||||||||||||||||| |||||||||||||  |||     
T  11861203 catcatcaagaccgggatatagtggcatggaagctaactgaggacaatattggatatttagctttgaaatgcaactgaaagatggtctatcattttcccg 11861104  T
Q  110 aatctcatttttccaccaacttttcagattaggacaatccgagattgtaagttccttcaaggatgg 175  Q
     || || |||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  11861103 tatgtctttttcccaccaactttttagattaggacaatctgagattgcaagttccttcaaggatgg 11861038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 11829071 - 11828906
Alignment:
Q  10 catcatcaagaccaggatatagaggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattacccca 109  Q
    ||||||||||||| ||||| ||  ||||||||||||||| ||||||  ||||||| ||||| |||||||||||||||||| |||||||||||||  ||||    
T  11829071 catcatcaagaccgggatagagcagcatgcaagctaattgaggacagtattggatatttagctttgaaatgcaactgaaagatggtctatcattgtccca 11828972  T
Q  110 aatctcatttttccaccaacttttcagattaggacaatccgagattgtaagttccttcaaggatgg 175  Q
     || ||||||| |||||||| ||| || ||| ||||||| |||||||| |||||||||||||||||    
T  11828971 tatgtcattttcccaccaaccttttagtttaagacaatctgagattgttagttccttcaaggatgg 11828906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 337
Target Start/End: Complemental strand, 11861002 - 11860897
Alignment:
Q  232 caatgaatttcagagagtccagtctccgaagttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcatttgggacagtcgttcaa 331  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||    
T  11861002 caatgaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctgatccattggtgggagaaatttgcaattgggacagtcgttcaa 11860903  T
Q  332 ggtaaa 337  Q
    ||||||    
T  11860902 ggtaaa 11860897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 11828870 - 11828764
Alignment:
Q  232 caatgaatttcagagagtccagtctccgaagttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcatttgggacagtcgttcaa 331  Q
    |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| |||||    
T  11828870 caataaatttcaaagagtccaatctccgaagttggagaaccttgagatgtggaagctcatccattggtgggagaaattcgcatttgggacagtcattcaa 11828771  T
Q  332 ggtaaac 338  Q
    |||||||    
T  11828770 ggtaaac 11828764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 11732876 - 11732735
Alignment:
Q  33 ggcatgcaagctaatttaggacaacattggatgtttagttttgaaatgcaactgaaatatggtctatcattaccccaaatc---tcatttttccaccaac 129  Q
    |||| ||| |||||||||||||||||| |||| ||||||||||||||||||  |||| ||||||| |  ||   | |  ||   ||||||| ||||||||    
T  11732876 ggcacgcatgctaatttaggacaacatcggatatttagttttgaaatgcaagggaaagatggtctgttttttttcaatgtcttatcattttcccaccaac 11732777  T
Q  130 ttttcagattaggacaatccgagattgtaagttccttcaagg 171  Q
    |||  || |||||||||||||| |||||||| ||||||||||    
T  11732776 tttcgagtttaggacaatccgaaattgtaagctccttcaagg 11732735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 11732674 - 11732568
Alignment:
Q  232 caatgaatttcagagagtccagtctccgaagttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcatttgggacagtcgttcaa 331  Q
    |||||||||  ||||| ||||  |||||||| |||||| ||||||||| |||||| ||||| ||||| || ||||| | |||||| ||||||||  ||||    
T  11732674 caatgaattcaagagattccaacctccgaagatggagagccttgagatttggaaggtgatcgattggcggtagaaatttgcatttaggacagtcactcaa 11732575  T
Q  332 ggtaaac 338  Q
    |||||||    
T  11732574 ggtaaac 11732568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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