View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_26 (Length: 336)
Name: NF19007_low_26
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 2199634 - 2199332
Alignment:
| Q |
18 |
acttatccaagtgactttagcataagtgcctagttttgcctgttaacaagtagttcgcgctttgaaaatgctcatatcatacaaatagcacagacctgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2199634 |
acttatccaagtgactttagcataagtgcctagttttgcctgttaacaagtagttcgcgctttgaaaatgctcata-----caaatagcacagacctgct |
2199540 |
T |
|
| Q |
118 |
caaccaggaccagaatgcttacaaagagcacaaacttgctcaaccaggaccagatttttcaaagattataaactcttaccaacacaacattagatacagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2199539 |
caaccaggaccagaatgcttacaaagagcacaaacttgctcaaccaggaccagatttttcaaagattataaactcttcccaacacaacattagatacagt |
2199440 |
T |
|
| Q |
218 |
caaagagaactacaatatgtaggctgcaatattttaaacttttccctttcttcattagtcctaccataccctctagtagaaatttcaaaacagcaactct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2199439 |
caaagagaactacaatatgtaggctgcaatattttaaacttttccctttcttcattagtcctaccataccctctagtagaaatttcaaaacagcaactct |
2199340 |
T |
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| Q |
318 |
ccattcat |
325 |
Q |
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|||||||| |
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| T |
2199339 |
ccattcat |
2199332 |
T |
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