View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19007_low_27 (Length: 335)

Name: NF19007_low_27
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19007_low_27
NF19007_low_27
[»] chr3 (19 HSPs)
chr3 (1-335)||(36664754-36665088)
chr3 (155-240)||(36677311-36677396)
chr3 (155-240)||(36687393-36687478)
chr3 (143-303)||(36704344-36704504)
chr3 (1-70)||(3547612-3547681)
chr3 (1-63)||(9145509-9145571)
chr3 (1-70)||(52550808-52550877)
chr3 (1-51)||(47638074-47638124)
chr3 (1-70)||(45093720-45093789)
chr3 (135-186)||(36711483-36711534)
chr3 (1-55)||(28690531-28690585)
chr3 (1-70)||(4238812-4238881)
chr3 (3-55)||(35718049-35718101)
chr3 (1-51)||(15503044-15503094)
chr3 (1-51)||(25097379-25097429)
chr3 (1-51)||(46483570-46483620)
chr3 (1-70)||(10435134-10435203)
chr3 (67-103)||(36677276-36677312)
chr3 (67-103)||(36687358-36687394)
[»] chr7 (5 HSPs)
chr7 (125-319)||(30905645-30905839)
chr7 (77-121)||(30905813-30905857)
chr7 (1-71)||(34478203-34478273)
chr7 (1-55)||(36643177-36643231)
chr7 (1-70)||(37231756-37231825)
[»] chr4 (9 HSPs)
chr4 (1-70)||(19631308-19631377)
chr4 (1-70)||(50033020-50033089)
chr4 (1-70)||(19731357-19731426)
chr4 (1-70)||(19525906-19525975)
chr4 (1-70)||(50035539-50035608)
chr4 (1-70)||(51737145-51737214)
chr4 (1-51)||(5123349-5123399)
chr4 (1-61)||(55014271-55014331)
chr4 (1-70)||(6923132-6923201)
[»] chr1 (8 HSPs)
chr1 (1-71)||(16751645-16751715)
chr1 (1-70)||(50481278-50481347)
chr1 (1-55)||(38738170-38738224)
chr1 (1-55)||(47222229-47222283)
chr1 (1-70)||(26441637-26441706)
chr1 (1-39)||(4605029-4605067)
chr1 (1-51)||(32565765-32565815)
chr1 (1-47)||(45235037-45235083)
[»] chr6 (4 HSPs)
chr6 (1-70)||(13207145-13207214)
chr6 (1-70)||(19068960-19069029)
chr6 (135-188)||(11295017-11295070)
chr6 (1-70)||(29403644-29403713)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-73)||(38552-38623)
[»] chr5 (12 HSPs)
chr5 (1-55)||(19889669-19889723)
chr5 (1-70)||(42421685-42421754)
chr5 (1-57)||(25563513-25563569)
chr5 (1-51)||(41411350-41411400)
chr5 (4-55)||(19087965-19088016)
chr5 (1-51)||(1830673-1830723)
chr5 (1-51)||(14475426-14475476)
chr5 (1-39)||(19868877-19868915)
chr5 (1-51)||(30779937-30779987)
chr5 (1-51)||(40316140-40316190)
chr5 (1-70)||(16048083-16048152)
chr5 (1-70)||(39405764-39405833)
[»] chr2 (7 HSPs)
chr2 (1-51)||(32776092-32776142)
chr2 (4-79)||(13399300-13399375)
chr2 (1-48)||(41463709-41463756)
chr2 (1-70)||(332278-332345)
chr2 (1-55)||(38137722-38137776)
chr2 (1-70)||(38963519-38963588)
chr2 (1-70)||(40598128-40598197)
[»] chr8 (4 HSPs)
chr8 (1-70)||(44123673-44123742)
chr8 (1-55)||(886259-886313)
chr8 (1-64)||(12893537-12893600)
chr8 (1-55)||(31127997-31128051)
[»] scaffold0366 (1 HSPs)
scaffold0366 (1-39)||(14090-14128)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 36665088 - 36664754
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagtagatatattcgaagcacaataatagttgtaa 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36665088 aagataaaacatatgcattggtacgtgtatcggagtcaattaagtcatctaatataaaacggagagagtagatatattcgaagcacaataatagttgtaa 36664989  T
Q  101 aattaatgagcattgaaaaaatagttgtacaattaatgagcattgaaaaaagctatcataggatcataaatgagttgtttagcattgatagccgcaatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36664988 aattaatgagcattgaaaaaatagttgtacaattaatgagcattgaaaaaagctatcataggatcataaatgagttgtttagcattgatagccgcaatga 36664889  T
Q  201 aatctaaatgtgcataattatccttcaacgacaccactagcttgttagaatcatgatcattgaggtcattaagcaaaagattcacatcatgtacgtcaga 300  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  36664888 aatctaaatgtgcataattatcgttcaacgacaccactagcttgttagaatcatgatccttgaggtcattaagcaaaagattcacatcctgtacgtcaga 36664789  T
Q  301 taacatatcttgccctccaacacctagaaaaagag 335  Q
    |||||||||||||||||||||||||||||||||||    
T  36664788 taacatatcttgccctccaacacctagaaaaagag 36664754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 36677311 - 36677396
Alignment:
Q  155 atcataggatcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatccttcaacgacaccactag 240  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  36677311 atcataggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactag 36677396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 36687393 - 36687478
Alignment:
Q  155 atcataggatcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatccttcaacgacaccactag 240  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  36687393 atcataggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactag 36687478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 303
Target Start/End: Original strand, 36704344 - 36704504
Alignment:
Q  143 ttgaaaaaagctatcataggatcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatccttcaacgacaccactagct 242  Q
    |||||||||||||| || |||||||||| || |||||||||||||  | |||| || |||||   ||||||||||| |||||| ||| | |||||  |||    
T  36704344 ttgaaaaaagctattatgggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccacgcgct 36704443  T
Q  243 tgttagaatcatgatcattgaggtcattaagcaaaagattcacatcatgtacgtcagataa 303  Q
    |||||| ||| |||||| |||| ||||| |||||||  |||||||| ||||| ||||||||    
T  36704444 tgttagcatcttgatcactgagatcattgagcaaaaccttcacatcttgtacatcagataa 36704504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3547612 - 3547681
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| | |||||| |||||    
T  3547612 aagataaaacatatgcattggtacgtgtgtcggagtcaattaggtcatctaatatgggacggagggagta 3547681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9145571 - 9145509
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacgga 63  Q
    ||||||||||||||||||||| |||||| |||||||||| || |||||||||||| |||||||    
T  9145571 aagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcatctaatatggaacgga 9145509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 52550808 - 52550877
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||| | |||| | |||||||||| ||||||||||||||| | ||||||||||||    
T  52550808 aagataaaacatatgcattagtacgtatgtcggagtcaactaagtcatctaatatgggacggagagagta 52550877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47638124 - 47638074
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  47638124 aagataaaacatatgcattggtacgtgtatcagaatcaattaagtcatcta 47638074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45093789 - 45093720
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| || ||||||| ||| |||||||||||  ||||||| |||||    
T  45093789 aagataaaacatatgcattggtacgtgtgtcagagtcaactaaatcatctaatatgtaacggagggagta 45093720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 36711483 - 36711534
Alignment:
Q  135 aatgagcattgaaaaaagctatcataggatcataaatgagttgtttagcatt 186  Q
    ||||||| ||||||||||||||||| |||||||||| || ||||||||||||    
T  36711483 aatgagcgttgaaaaaagctatcatgggatcataaacgacttgtttagcatt 36711534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28690585 - 28690531
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||||||||||||||||| | |||| |||||||||| || ||||||||||||    
T  28690585 aagataaaacatatgcattggtatgtgtgtcggagtcaactaggtcatctaatat 28690531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4238812 - 4238881
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||  |||| |||||| |||||||| |||||    
T  4238812 aagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatggaacggagggagta 4238881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 35718049 - 35718101
Alignment:
Q  3 gataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||||||||||||||| |||||| || ||||||| ||| |||||||||||    
T  35718049 gataaaacatatgcattggtacgtgtgtcagagtcaactaaatcatctaatat 35718101  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15503094 - 15503044
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||||  |||| | ||||||||||||| ||||||||    
T  15503094 aagataaaacatatgcattgatacgtatgtcggagtcaattaggtcatcta 15503044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 25097379 - 25097429
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||||| |||||| |  ||||||| |||||||||||    
T  25097379 aagataaaacatatgcattggtacgtgtgttagagtcaactaagtcatcta 25097429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 46483620 - 46483570
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||||| |||||| || ||||||| || ||||||||    
T  46483620 aagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatcta 46483570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10435203 - 10435134
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||  |||| |||||| | ||||| ||||||    
T  10435203 aagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggatagagta 10435134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 36677276 - 36677312
Alignment:
Q  67 agtagatatattcgaagcacaataatagttgtaaaat 103  Q
    |||||||||||| |||||||||||||| |||||||||    
T  36677276 agtagatatatttgaagcacaataataattgtaaaat 36677312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 36687358 - 36687394
Alignment:
Q  67 agtagatatattcgaagcacaataatagttgtaaaat 103  Q
    |||||||||||| |||||||||||||| |||||||||    
T  36687358 agtagatatatttgaagcacaataataattgtaaaat 36687394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 125 - 319
Target Start/End: Complemental strand, 30905839 - 30905645
Alignment:
Q  125 ttgtacaattaatgagcattgaaaaaagctatcataggatcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatcct 224  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||||  | |||||||||| |||  |||  ||  |||||   |||||||||||  |  |    
T  30905839 ttgtaaaattaatgagcgttgaaaaaagctatcatgggatcataaaccacttgtttagcactgacggccataacaaaatcagcatgtgcataatcttgat 30905740  T
Q  225 tcaacgacaccactagcttgttagaatcatgatcattgaggtcattaagcaaaagattcacatcatgtacgtcagataacatatcttgccctcca 319  Q
    | ||||   |||| |||||||||| ||||||||| | ||||||||| |||||||  |||||||| ||||| ||||||| ||||||||||||||||    
T  30905739 tgaacgctgccacgagcttgttagcatcatgatcttggaggtcattgagcaaaaccttcacatcttgtacatcagatagcatatcttgccctcca 30905645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 30905857 - 30905813
Alignment:
Q  77 ttcgaagcacaataatagttgtaaaattaatgagcattgaaaaaa 121  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||    
T  30905857 ttcgaagcacaataatcattgtaaaattaatgagcgttgaaaaaa 30905813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 34478203 - 34478273
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagtag 71  Q
    ||||||||||||||||||||| |||||| ||| |||||| || || || |||||| | |||||| ||||||    
T  34478203 aagataaaacatatgcattggtacgtgtgtcgaagtcaactaggttatttaatatgggacggagggagtag 34478273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36643231 - 36643177
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||||||||||||||||| |||||| ||| |||||||||  |||| ||||||    
T  36643231 aagataaaacatatgcattggtacgtgtgtcgaagtcaattagatcatttaatat 36643177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37231756 - 37231825
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||  |||| |||||| | |||||| |||||    
T  37231756 aagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 37231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19631377 - 19631308
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||    
T  19631377 aagataaaacatatgcattggtacgtgtgtcggagtcaattaagtcatctaatataggacggagagagta 19631308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 50033089 - 50033020
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| | ||||||||||||    
T  50033089 aagataaaacatatgcattggtacgtgtgtcggagtcaactaagtcatctaatatgggacggagagagta 50033020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19731357 - 19731426
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| |||||||||| || |||||||||||| ||||| || |||||    
T  19731357 aagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcatctaatatggaacgaagggagta 19731426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19525906 - 19525975
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| |||||| || ||||| |||||||| |||||| |||||    
T  19525906 aagataaaacatatgcattggtacgtgtgtcgaagtcaactaggtcatttaatataggacggagggagta 19525975  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 50035608 - 50035539
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||  |||||| |||||||||| ||  ||||||||||| | ||||||||||||    
T  50035608 aagataaaacatatgcattgatacgtgtgtcggagtcaactagatcatctaatatgggacggagagagta 50035539  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 51737145 - 51737214
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||||||||||  | || ||||||||| | ||||||||||||    
T  51737145 aagataaaacatatgcattggtacgtgtgtcggagtcaacaaggttatctaatatgggacggagagagta 51737214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 5123349 - 5123399
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||||| |||||| || ||||||| |||||||||||    
T  5123349 aagataaaacatatgcattggtacgtgtgtcagagtcaactaagtcatcta 5123399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 55014331 - 55014271
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacg 61  Q
    ||||||||||||||||||| | |||||| |||||||||| || || ||||||||| |||||    
T  55014331 aagataaaacatatgcattagtacgtgtgtcggagtcaactaggttatctaatatggaacg 55014271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 6923132 - 6923201
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||  |||| |||||||  |||||| |||||    
T  6923132 aagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatataagacggagggagta 6923201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16751645 - 16751715
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagtag 71  Q
    ||||||||||||||||||||| |||||| |||||||||| || |||||||||||| |||||||| ||||||    
T  16751645 aagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcatctaatatggaacggagggagtag 16751715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 50481347 - 50481278
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||||| |||| ||||||||||||||| | |||||| |||||    
T  50481347 aagataaaacatatgcattggtacgtgtgtcggaatcaactaagtcatctaatatgggacggagggagta 50481278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38738170 - 38738224
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||||||||||||||||| |||||| |||||||||| || ||||||||||||    
T  38738170 aagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcatctaatat 38738224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 47222283 - 47222229
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||||||||||||||||| |||||| |||||||||| || ||||| ||||||    
T  47222283 aagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcatttaatat 47222229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26441706 - 26441637
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||  |||| |||||| |||||||| |||||    
T  26441706 aagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatggaacggagggagta 26441637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4605067 - 4605029
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaa 39  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  4605067 aagataaaacatatgcattggtacgtgtgtcggagtcaa 4605029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 32565815 - 32565765
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    |||| |||||||||||||||| |||||| || ||||||| |||||||||||    
T  32565815 aagagaaaacatatgcattggtacgtgtgtcagagtcaactaagtcatcta 32565765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45235037 - 45235083
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtca 47  Q
    ||||||||||||||||||||| |||||| || ||||||| |||||||    
T  45235037 aagataaaacatatgcattggtacgtgtgtcagagtcaactaagtca 45235083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 13207145 - 13207214
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| || ||||||| || |||||||||| ||| ||||||||||||    
T  13207145 aagataaaacatatgcattggtacgtgtgtcagagtcaactaggtcatctaatgtaggacggagagagta 13207214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19068960 - 19069029
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||| ||||| ||||| |||||||||||||| || |||||||||||| || | ||||||||||||    
T  19068960 aagataaaatatatgtattggtacgtgtatcggagttaactaagtcatctaaaatcggacggagagagta 19069029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 11295070 - 11295017
Alignment:
Q  135 aatgagcattgaaaaaagctatcataggatcataaatgagttgtttagcattga 188  Q
    ||||||||||||||||| ||||||| |||||||||| |  ||||||||| ||||    
T  11295070 aatgagcattgaaaaaatctatcatgggatcataaacgtcttgtttagctttga 11295017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29403713 - 29403644
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||| ||||||| | |||| || ||||||| |||||||| || || || ||||||||||||    
T  29403713 aagataaaacatacgcattggtatgtgtgtcagagtcaactaagtcatttattaaaggacggagagagta 29403644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 38552 - 38623
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagtagat 73  Q
    ||||||||||||||||||||| |||| | ||| |||||| ||| |||||||||||||||||||| ||||||||    
T  38552 aagataaaacatatgcattggtacgtatgtcgaagtcaactaaatcatctaatatagaacggag-gagtagat 38623  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19889723 - 19889669
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||    
T  19889723 aagataaaacatatgcattggtacgtgtatcggagtcaactaggtcctctaatat 19889669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42421754 - 42421685
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    |||||||||||||||||| || |||||| |||||||||| ||  ||||||||||| |||||||| |||||    
T  42421754 aagataaaacatatgcataggtacgtgtgtcggagtcaactagatcatctaatatggaacggagtgagta 42421685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25563569 - 25563513
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatag 57  Q
    |||||||||||||||||||||||||||| | | |||||| || ||||||||||||||    
T  25563569 aagataaaacatatgcattggaacgtgtgttgaagtcaactaggtcatctaatatag 25563513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41411350 - 41411400
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||||| |||||| ||| |||||| |||||||||||    
T  41411350 aagataaaacatatgcattggtacgtgtgtcgaagtcaactaagtcatcta 41411400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 19087965 - 19088016
Alignment:
Q  4 ataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||| |||||||||| |||||| |||||||||| || ||||||||||||    
T  19087965 ataaaacttatgcattggtacgtgtgtcggagtcaactacgtcatctaatat 19088016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 1830723 - 1830673
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||||| || ||| ||| |||||| |||||||||||    
T  1830723 aagataaaacatatgcattggtacatgtgtcgaagtcaactaagtcatcta 1830673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14475426 - 14475476
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||| | |||||| |||||||||| || ||||||||    
T  14475426 aagataaaacatatgcatttgtacgtgtgtcggagtcaactaggtcatcta 14475476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19868877 - 19868915
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaa 39  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  19868877 aagataaaacatatgcattggtacgtgtgtcggagtcaa 19868915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 30779937 - 30779987
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||| ||||| |||||| |||||||||| || ||||||||    
T  30779937 aagataaaacatatgtattggtacgtgtgtcggagtcaactaggtcatcta 30779987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40316190 - 40316140
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||||| || ||| ||| |||||| |||||||||||    
T  40316190 aagataaaacatatgcattggtacatgtgtcgaagtcaactaagtcatcta 40316140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 16048152 - 16048083
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||  |||| | |||| | ||||||||||||    
T  16048152 aagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttgatatgggacggagagagta 16048083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39405833 - 39405764
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||  |||| |||||| | |||||| |||||    
T  39405833 aagataaaacatatgcattggtacgtgtctcgaagtcaactagatcatttaatatgggacggagggagta 39405764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 32776092 - 32776142
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatcta 51  Q
    ||||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  32776092 aagataaaacatatgcattggtacgtgtatcggagtcaactaggtcatcta 32776142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 13399300 - 13399375
Alignment:
Q  4 ataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagtagatatattc 79  Q
    ||||||| |||||||||| || |||||| ||||||| ||||||||||||| | |||| ||  ||||||||| ||||    
T  13399300 ataaaacgtatgcattggtacatgtatcagagtcaactaagtcatctaatgtggaacagaaggagtagatacattc 13399375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41463709 - 41463756
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcat 48  Q
    ||||||||||||||||||||| |||||| |||||||||| || |||||    
T  41463709 aagataaaacatatgcattggtacgtgtgtcggagtcaactaggtcat 41463756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 332345 - 332278
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    |||||||||||||||| |||| ||||||  ||||||||| || |||||||||||| | |||||| |||||    
T  332345 aagataaaacatatgcgttggtacgtgt--cggagtcaaataggtcatctaatatgggacggagggagta 332278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 38137722 - 38137776
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||||||||||||||| | |||||| |||||||||| ||  |||||||||||    
T  38137722 aagataaaacatatgcatttgtacgtgtgtcggagtcaactagatcatctaatat 38137776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38963588 - 38963519
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| ||| || || |||||||| ||  |||||||| |||||    
T  38963588 aagataaaacatatgcattggtacgtgtgtcgaagttaactaggtcatctattaaggaacggagggagta 38963519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 40598197 - 40598128
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||  |||| |||||| | |||||| |||||    
T  40598197 aagataaaacatatgcattggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagta 40598128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44123742 - 44123673
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggagagagta 70  Q
    ||||||||||||||||||||  |||||| |||||||||| ||  ||||||||||| | ||||||||||||    
T  44123742 aagataaaacatatgcattgatacgtgtgtcggagtcaactagatcatctaatatgggacggagagagta 44123673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 886259 - 886313
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||||||||||||||||| |||||| ||||||||||  | ||||||||||||    
T  886259 aagataaaacatatgcattggtacgtgtgtcggagtcaaccaggtcatctaatat 886313  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 12893600 - 12893537
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatatagaacggag 64  Q
    ||||||||||||||||||||  |||||| |||||||||| ||| | ||||| ||||| ||||||    
T  12893600 aagataaaacatatgcattgatacgtgtgtcggagtcaactaaatgatctattataggacggag 12893537  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31127997 - 31128051
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaattaagtcatctaatat 55  Q
    ||||||||||||||||||||| |||||| ||| |||||| ||| |||| ||||||    
T  31127997 aagataaaacatatgcattggtacgtgtgtcgaagtcaactaaatcatttaatat 31128051  T

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Target: scaffold0366 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14128 - 14090
Alignment:
Q  1 aagataaaacatatgcattggaacgtgtatcggagtcaa 39  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  14128 aagataaaacatatgcattggtacgtgtatcagagtcaa 14090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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