View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_30 (Length: 299)
Name: NF19007_low_30
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 1516743 - 1517013
Alignment:
| Q |
18 |
atttcagaccatcgctggtagaagaaatatttagcagtggcagacttcaatctcatagaaatacgattcaattcaactccaattggaacaccctaagaag |
117 |
Q |
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| T |
1516743 |
atttcagaccatcgctggtagaagaaatatttagcagtggcagacttcaatctcatagaaatacgattcaattcaactccaattggaacaccctaagaag |
1516842 |
T |
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| Q |
118 |
tcctcagtatgaaaaggaagaggacaaactttttcaattcttcataacaacaacaacaatcgatttcttccattataactagaagtaaatcaatggctgc |
217 |
Q |
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| T |
1516843 |
tcctcagtatgaaaaggaagaggacaaactttttcaattcttcataacaacaacaacaatcgatttcttccattataactagaagtaaatcaatggctgc |
1516942 |
T |
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| Q |
218 |
aaaattttatttacctgaagattgttgggaacatgtcttaagtttgctcggagacaaaaccgatgatgatg |
288 |
Q |
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| T |
1516943 |
aaaattttatttacctgaagattgttgggaacatgtcttcagtttgctcggagacaaaaccgatgaggatg |
1517013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 1533234 - 1533495
Alignment:
| Q |
18 |
atttcagaccatcgctggtagaagaaatatttagcagtggcagacttcaatctcatagaaatacgattcaattcaactccaattggaacaccctaagaag |
117 |
Q |
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| T |
1533234 |
attttagaccatcgctggtagaagaaatatttagcagtggcagacttcaatctcatagaaatacgattcacttcaattccaataggaacaccctaagaag |
1533333 |
T |
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| Q |
118 |
tcctcagtatgaaaaggaagaggacaaactttttcaattcttcataacaacaacaacaatcgatttcttccattataactagaagtaaatcaatggctgc |
217 |
Q |
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| T |
1533334 |
tcctcattatgaaaaggaagaggacaaactcttttgattcttc---acaacaacaacaatcgatttcttccattataagtagaagtaaatcaatggctgc |
1533430 |
T |
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| Q |
218 |
aaaattttatttacctgaagattgttgggaacatgtcttaagtttgctcggagacaaaaccgatg |
282 |
Q |
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| T |
1533431 |
aaaattttatttacctgaagattgttgggaacatgtcttaagattgctcggatacaacaccgatg |
1533495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 1495178 - 1495413
Alignment:
| Q |
18 |
atttcagaccatcgctggtagaagaaat-atttagcagtggcagacttcaatctcatagaaatacgattcaattcaactccaattggaacaccctaagaa |
116 |
Q |
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|||||||| ||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||| ||||| |||| | || ||||||| |
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| T |
1495178 |
atttcagatcatcgctggtagaagaaattatttatcagtcacagaattcaatctcatagaaatactattca---caac----------aaactctaagaa |
1495264 |
T |
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| Q |
117 |
gtcctcagtatgaaaaggaagaggacaaactttttcaattcttcataacaacaacaacaatcgatttcttccattataactagaagtaaatcaatggctg |
216 |
Q |
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||||||| |||||| |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
1495265 |
gtcctcaatatgaagaggaagaggacaaactctttcaattcttca---------caacaatctatttcttccattataactagaagtaaatcaaaggctg |
1495355 |
T |
|
| Q |
217 |
caaaattttatttacctgaagattgttgggaacatgtcttaagtttgctcggagacaa |
274 |
Q |
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| T |
1495356 |
caaaattttatttacctgaacattgttgggaacatatcttaagattgctcggagacaa |
1495413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 17206900 - 17206942
Alignment:
| Q |
164 |
acaacaacaacaatcgatttcttccattataactagaagtaaa |
206 |
Q |
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| T |
17206900 |
acaacaacaacaatcgctttcttccataataacaagaagtaaa |
17206942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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