View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19007_low_31 (Length: 295)
Name: NF19007_low_31
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 23767446 - 23767161
Alignment:
| Q |
5 |
ttctacctaggaatcgaactcgggttctctcgaatgattcatcattggtgaagcacattagtagagtagtgcnnnnnnnnnnnnn---------taacct |
95 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
23767446 |
ttctacctaagaatcgaacccgggttctctcgaatgattcatcattggtgaagctcattagtagagcagtgcaaaaaaaataaaaaaataaaaataacct |
23767347 |
T |
|
| Q |
96 |
tcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaa |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23767346 |
tcaatttttccatgtgaaaagcagggttgattatccttctatgcttggtccacttttctccttctagtttaacaagaccgcgagttattaacttcataaa |
23767247 |
T |
|
| Q |
196 |
cttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23767246 |
cttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttg |
23767161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 90 - 279
Target Start/End: Original strand, 23784775 - 23784964
Alignment:
| Q |
90 |
taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt |
189 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23784775 |
taaccttcaatttttccatgtgaaacgcagggttgattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt |
23784874 |
T |
|
| Q |
190 |
cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
23784875 |
cataaacttatattgaacctttgggaactcagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggttt |
23784964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 120 - 281
Target Start/End: Complemental strand, 23796515 - 23796354
Alignment:
| Q |
120 |
ggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23796515 |
ggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactc |
23796416 |
T |
|
| Q |
220 |
agatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23796415 |
agatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttg |
23796354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 23796616 - 23796545
Alignment:
| Q |
5 |
ttctacctaggaatcgaactcgggttctctcgaatgattcatcattggtgaagcacattagtagagtagtgc |
76 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23796616 |
ttctacctaagaatcgaacttggattctctcgaatgattcatcattggtgaagctcattagtagagcagtgc |
23796545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 258
Target Start/End: Complemental strand, 30393975 - 30393807
Alignment:
| Q |
90 |
taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt |
189 |
Q |
| |
|
|||||||||||| ||| | || |||||||||||||||| |||||||||||||||||| |||||||| | || ||||||| | || || |||||| |
|
|
| T |
30393975 |
taaccttcaattgttctaaatggaaagcagggttgattagccttctatgcttgctccatttttctcccccataactagcaagaccactagctagtaactt |
30393876 |
T |
|
| Q |
190 |
cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttc |
258 |
Q |
| |
|
| || |||||| | | ||||||||| ||||| || ||||| ||||| ||| |||||||||||||||| |
|
|
| T |
30393875 |
gaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttc |
30393807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 30383824 - 30383758
Alignment:
| Q |
90 |
taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctcc |
156 |
Q |
| |
|
|||||||||| ||||| | || |||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
30383824 |
taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctcc |
30383758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 8381668 - 8381734
Alignment:
| Q |
90 |
taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctcc |
156 |
Q |
| |
|
|||||||||||||||| | || ||||||| ||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
8381668 |
taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctcc |
8381734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 30482220 - 30482157
Alignment:
| Q |
90 |
taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttc |
153 |
Q |
| |
|
|||||||||||||||| | || || ||||| || |||||| |||||||||||||||||||||| |
|
|
| T |
30482220 |
taaccttcaatttttctaaatggaatgcaggatttattatctttctatgcttgctccacttttc |
30482157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 281
Target Start/End: Original strand, 41628725 - 41628916
Alignment:
| Q |
90 |
taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaactt |
189 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||| || || | ||||||| | | || |||||| |
|
|
| T |
41628725 |
taaccttcaatttttctgaatggaaagcggggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt |
41628824 |
T |
|
| Q |
190 |
cataaacttatattgaacctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttg |
281 |
Q |
| |
|
| || ||||| | | |||||| || ||||| || ||||| ||||| ||| | |||||||||||||| | |||||||||| |||||||| |
|
|
| T |
41628825 |
gaaaatcttatgattattctttggaaagtcagagatattgttcaatacatctatgatttgctcaggttctgtgagaatcacccttggttttg |
41628916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 38021526 - 38021488
Alignment:
| Q |
5 |
ttctacctaggaatcgaactcgggttctctcgaatgatt |
43 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
38021526 |
ttctacctaggaatcgaactcaggttctctcaaatgatt |
38021488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University