View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19007_low_34 (Length: 271)

Name: NF19007_low_34
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19007_low_34
NF19007_low_34
[»] chr3 (7 HSPs)
chr3 (26-254)||(20016681-20016909)
chr3 (63-192)||(19811728-19811854)
chr3 (63-192)||(19837829-19837955)
chr3 (61-105)||(19848439-19848483)
chr3 (63-157)||(19955517-19955608)
chr3 (64-193)||(19988977-19989103)
chr3 (65-140)||(19818004-19818076)
[»] chr5 (3 HSPs)
chr5 (64-246)||(9814483-9814665)
chr5 (66-203)||(26355460-26355594)
chr5 (64-246)||(2319524-2319706)
[»] chr4 (1 HSPs)
chr4 (66-246)||(55864516-55864696)
[»] chr7 (3 HSPs)
chr7 (64-246)||(45887537-45887719)
chr7 (64-246)||(47331558-47331743)
chr7 (64-246)||(48259504-48259686)
[»] chr1 (1 HSPs)
chr1 (66-150)||(1716671-1716752)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 26 - 254
Target Start/End: Complemental strand, 20016909 - 20016681
Alignment:
Q  26 acaaccatcaatgatgaatgagaagccatttaatgctatgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctc 125  Q
    ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016909 acaacaatcaatgatgaatgagaagccattgaatgctatcatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctc 20016810  T
Q  126 agaactgcccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016809 agaactgcccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagt 20016710  T
Q  226 cgcctttgaagtttcatttcactgggtgg 254  Q
    |||||||||||||||||||||||||||||    
T  20016709 cgcctttgaagtttcatttcactgggtgg 20016681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 19811728 - 19811854
Alignment:
Q  63 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca 162  Q
    |||||||| || ||||||||||||||||| |||||| ||||||   ||| |||  ||||| |||||||||| |||||| | |||||||||||||| | ||    
T  19811728 atgatggaagtcagggaagatttcatgctttcaccttctggtg---acagtgattcaactttcagaactgctcattttcttaaacccatttcaaactcca 19811824  T
Q  163 ttcatgaatcaccttttggttttaatccat 192  Q
    |||||||| || ||||||  ||||||||||    
T  19811825 ttcatgaaccagcttttgagtttaatccat 19811854  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 19837829 - 19837955
Alignment:
Q  63 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca 162  Q
    ||||||||||||||||||||||||||||| |||| |||   |||||| | ||||||||| |||||||||||||||||| | ||||| ||| |||| | ||    
T  19837829 atgatggaggtgagggaagatttcatgctttcacttgc---tggtgatagtgaagcaacactcagaactgcccattttcttaaacctattgcaaactcca 19837925  T
Q  163 ttcatgaatcaccttttggttttaatccat 192  Q
    || | ||| ||||||||  |||||| ||||    
T  19837926 ttgaagaaccaccttttaattttaagccat 19837955  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 19848439 - 19848483
Alignment:
Q  61 ctatgatggaggtgagggaagatttcatgctctcacctgctggtg 105  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  19848439 ctatgatggaggtgagggaagatttcatgctttcaccagctggtg 19848483  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 19955517 - 19955608
Alignment:
Q  63 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaa 157  Q
    |||||||||||||||||||| |||||||| ||||| ||||||| |   | |||  |||| |||||||| ||||||||| | ||||||||||||||    
T  19955517 atgatggaggtgagggaagagttcatgctttcaccagctggtgat---agtgatccaacactcagaacagcccattttcttaaacccatttcaaa 19955608  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 19988977 - 19989103
Alignment:
Q  64 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 163  Q
    |||||||||||| |||||||  |||||| ||||| |||||||   ||| |||| ||| ||||||||  ||||||||| | ||||||||||||||   |||    
T  19988977 tgatggaggtgaaggaagatcacatgctttcaccagctggtg---acagtgaaccaattctcagaatcgcccattttctcaaacccatttcaaacaccat 19989073  T
Q  164 tcatgaatcaccttttggttttaatccatc 193  Q
    | | ||| |||||| ||| |||||||||||    
T  19989074 tgaagaaccaccttctgggtttaatccatc 19989103  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 19818004 - 19818076
Alignment:
Q  65 gatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccatttt 140  Q
    ||||||||| || |||||||||||||| ||||||||   |||||||| |||  |||| ||||||||||| ||||||    
T  19818004 gatggaggttagagaagatttcatgctttcacctgc---tggtgacagtgatccaacactcagaactgctcatttt 19818076  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 246
Target Start/End: Original strand, 9814483 - 9814665
Alignment:
Q  64 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 163  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  9814483 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 9814579  T
Q  164 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 246  Q
    ||||||   |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  9814580 tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 9814665  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 26355594 - 26355460
Alignment:
Q  66 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc 165  Q
    ||||||| |||||||||||||||||||||||| | ||||    ||| |||||||||| ||||||  ||||||||| |||||||||||||||||| |||||    
T  26355594 atggaggagagggaagatttcatgctctcaccagatggtc---acagtgaagcaactttcagaatagcccattttctaaaacccatttcaaattccattc 26355498  T
Q  166 atgaatcaccttttggttttaatccatcatcaatgtct 203  Q
    |||||  ||||||||| ||||| |||||||||||||||    
T  26355497 atgaacaaccttttggctttaacccatcatcaatgtct 26355460  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 246
Target Start/End: Complemental strand, 2319706 - 2319524
Alignment:
Q  64 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 163  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  2319706 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 2319610  T
Q  164 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 246  Q
    | ||||   || ||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  2319609 ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 2319524  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 246
Target Start/End: Complemental strand, 55864696 - 55864516
Alignment:
Q  66 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc 165  Q
    |||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||   | |||||| |||||||||||||||||| |||||    
T  55864696 atggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatgactcattttctaaaacccatttcaaattccattc 55864600  T
Q  166 atga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 246  Q
    ||||   |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  55864599 atgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 55864516  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 64 - 246
Target Start/End: Complemental strand, 45887719 - 45887537
Alignment:
Q  64 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 163  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  45887719 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 45887623  T
Q  164 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 246  Q
    | ||||   || ||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  45887622 ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 45887537  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 64 - 246
Target Start/End: Original strand, 47331558 - 47331743
Alignment:
Q  64 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 163  Q
    ||||| |||||||||||||||||||| |||||||  |   |||||||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  47331558 tgatgaaggtgagggaagatttcatgatctcaccaac---tggtgacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 47331654  T
Q  164 tcatga------atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 246  Q
    ||||||      |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| | ||||||| || |||||||    
T  47331655 tcatgaaccatcatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggtctttgaaattccatttca 47331743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 246
Target Start/End: Complemental strand, 48259686 - 48259504
Alignment:
Q  64 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 163  Q
    ||||| |||||||||||||||||||| |||||||  | |||    ||| |||| ||||||| ||||  || |||||| |||||| ||||||||||| |||    
T  48259686 tgatgaaggtgagggaagatttcatgatctcaccaaccggtc---acagtgaaacaactcttagaatggctcattttctaaaactcatttcaaattccat 48259590  T
Q  164 tcatgaa---tcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 246  Q
    |||||||   ||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  48259589 tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 48259504  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 1716671 - 1716752
Alignment:
Q  66 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaaccca 150  Q
    |||||||||||||||||||||||||| ||||   ||||| |||| | |||| ||||  ||||||| ||||||||| | |||||||    
T  1716671 atggaggtgagggaagatttcatgctttcac---ctggttgtgagaatgaaccaacattcagaacagcccattttctcaaaccca 1716752  T

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