View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19007_low_37 (Length: 257)

Name: NF19007_low_37
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19007_low_37
NF19007_low_37
[»] chr3 (7 HSPs)
chr3 (19-240)||(20016681-20016902)
chr3 (49-178)||(19811728-19811854)
chr3 (49-178)||(19837829-19837955)
chr3 (47-91)||(19848439-19848483)
chr3 (49-143)||(19955517-19955608)
chr3 (50-179)||(19988977-19989103)
chr3 (51-126)||(19818004-19818076)
[»] chr5 (3 HSPs)
chr5 (50-232)||(9814483-9814665)
chr5 (52-189)||(26355460-26355594)
chr5 (50-232)||(2319524-2319706)
[»] chr4 (1 HSPs)
chr4 (52-232)||(55864516-55864696)
[»] chr7 (3 HSPs)
chr7 (50-232)||(45887537-45887719)
chr7 (50-232)||(47331558-47331743)
chr7 (50-232)||(48259504-48259686)
[»] chr1 (1 HSPs)
chr1 (52-136)||(1716671-1716752)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 20016902 - 20016681
Alignment:
Q  19 tcaatgatgaatgagaagccatttaatgctatgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactg 118  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016902 tcaatgatgaatgagaagccattgaatgctatcatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactg 20016803  T
Q  119 cccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgccttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20016802 cccattttttaaaacccatttcaaattacattcatgaatcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgccttt 20016703  T
Q  219 gaagtttcatttcactgggtgg 240  Q
    ||||||||||||||||||||||    
T  20016702 gaagtttcatttcactgggtgg 20016681  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 19811728 - 19811854
Alignment:
Q  49 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca 148  Q
    |||||||| || ||||||||||||||||| |||||| ||||||   ||| |||  ||||| |||||||||| |||||| | |||||||||||||| | ||    
T  19811728 atgatggaagtcagggaagatttcatgctttcaccttctggtg---acagtgattcaactttcagaactgctcattttcttaaacccatttcaaactcca 19811824  T
Q  149 ttcatgaatcaccttttggttttaatccat 178  Q
    |||||||| || ||||||  ||||||||||    
T  19811825 ttcatgaaccagcttttgagtttaatccat 19811854  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 178
Target Start/End: Original strand, 19837829 - 19837955
Alignment:
Q  49 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattaca 148  Q
    ||||||||||||||||||||||||||||| |||| |||   |||||| | ||||||||| |||||||||||||||||| | ||||| ||| |||| | ||    
T  19837829 atgatggaggtgagggaagatttcatgctttcacttgc---tggtgatagtgaagcaacactcagaactgcccattttcttaaacctattgcaaactcca 19837925  T
Q  149 ttcatgaatcaccttttggttttaatccat 178  Q
    || | ||| ||||||||  |||||| ||||    
T  19837926 ttgaagaaccaccttttaattttaagccat 19837955  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 19848439 - 19848483
Alignment:
Q  47 ctatgatggaggtgagggaagatttcatgctctcacctgctggtg 91  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  19848439 ctatgatggaggtgagggaagatttcatgctttcaccagctggtg 19848483  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 19955517 - 19955608
Alignment:
Q  49 atgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaa 143  Q
    |||||||||||||||||||| |||||||| ||||| ||||||| |   | |||  |||| |||||||| ||||||||| | ||||||||||||||    
T  19955517 atgatggaggtgagggaagagttcatgctttcaccagctggtgat---agtgatccaacactcagaacagcccattttcttaaacccatttcaaa 19955608  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 179
Target Start/End: Original strand, 19988977 - 19989103
Alignment:
Q  50 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 149  Q
    |||||||||||| |||||||  |||||| ||||| |||||||   ||| |||| ||| ||||||||  ||||||||| | ||||||||||||||   |||    
T  19988977 tgatggaggtgaaggaagatcacatgctttcaccagctggtg---acagtgaaccaattctcagaatcgcccattttctcaaacccatttcaaacaccat 19989073  T
Q  150 tcatgaatcaccttttggttttaatccatc 179  Q
    | | ||| |||||| ||| |||||||||||    
T  19989074 tgaagaaccaccttctgggtttaatccatc 19989103  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 19818004 - 19818076
Alignment:
Q  51 gatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccatttt 126  Q
    ||||||||| || |||||||||||||| ||||||||   |||||||| |||  |||| ||||||||||| ||||||    
T  19818004 gatggaggttagagaagatttcatgctttcacctgc---tggtgacagtgatccaacactcagaactgctcatttt 19818076  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 9814483 - 9814665
Alignment:
Q  50 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 149  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  9814483 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 9814579  T
Q  150 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 232  Q
    ||||||   |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  9814580 tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 9814665  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 26355594 - 26355460
Alignment:
Q  52 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc 151  Q
    ||||||| |||||||||||||||||||||||| | ||||    ||| |||||||||| ||||||  ||||||||| |||||||||||||||||| |||||    
T  26355594 atggaggagagggaagatttcatgctctcaccagatggtc---acagtgaagcaactttcagaatagcccattttctaaaacccatttcaaattccattc 26355498  T
Q  152 atgaatcaccttttggttttaatccatcatcaatgtct 189  Q
    |||||  ||||||||| ||||| |||||||||||||||    
T  26355497 atgaacaaccttttggctttaacccatcatcaatgtct 26355460  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 2319706 - 2319524
Alignment:
Q  50 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 149  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  2319706 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 2319610  T
Q  150 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 232  Q
    | ||||   || ||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  2319609 ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 2319524  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 55864696 - 55864516
Alignment:
Q  52 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacattc 151  Q
    |||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||   | |||||| |||||||||||||||||| |||||    
T  55864696 atggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatgactcattttctaaaacccatttcaaattccattc 55864600  T
Q  152 atga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 232  Q
    ||||   |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  55864599 atgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 55864516  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 45887719 - 45887537
Alignment:
Q  50 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 149  Q
    |||||||||||||||||||||||||| |||||||  |   |||| ||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  45887719 tgatggaggtgagggaagatttcatgatctcaccaac---tggtcacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 45887623  T
Q  150 tcatga---atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 232  Q
    | ||||   || ||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  45887622 ttatgaaccatgaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 45887537  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 47331558 - 47331743
Alignment:
Q  50 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 149  Q
    ||||| |||||||||||||||||||| |||||||  |   |||||||| |||||||||||| ||||  || |||||| |||||||||||||||||| |||    
T  47331558 tgatgaaggtgagggaagatttcatgatctcaccaac---tggtgacagtgaagcaactcttagaatggctcattttctaaaacccatttcaaattccat 47331654  T
Q  150 tcatga------atcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 232  Q
    ||||||      |||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| | ||||||| || |||||||    
T  47331655 tcatgaaccatcatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggtctttgaaattccatttca 47331743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 48259686 - 48259504
Alignment:
Q  50 tgatggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaacccatttcaaattacat 149  Q
    ||||| |||||||||||||||||||| |||||||  | |||    ||| |||| ||||||| ||||  || |||||| |||||| ||||||||||| |||    
T  48259686 tgatgaaggtgagggaagatttcatgatctcaccaaccggtc---acagtgaaacaactcttagaatggctcattttctaaaactcatttcaaattccat 48259590  T
Q  150 tcatgaa---tcaccttttggttttaatccatcatcaatgtctcgtgtctttcatccaaaggagtcgcctttgaagtttcatttca 232  Q
    |||||||   ||||||||||||||||| ||||||||| |||||  ||| ||| ||||||| |||| ||||||||| || |||||||    
T  48259589 tcatgaaccatcaccttttggttttaacccatcatcattgtcttatgtgtttgatccaaatgagtggcctttgaaattccatttca 48259504  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 1716671 - 1716752
Alignment:
Q  52 atggaggtgagggaagatttcatgctctcacctgctggtggtgacactgaagcaactctcagaactgcccattttttaaaaccca 136  Q
    |||||||||||||||||||||||||| ||||   ||||| |||| | |||| ||||  ||||||| ||||||||| | |||||||    
T  1716671 atggaggtgagggaagatttcatgctttcac---ctggttgtgagaatgaaccaacattcagaacagcccattttctcaaaccca 1716752  T

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