View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_41 (Length: 252)
Name: NF19007_low_41
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 36552321 - 36552093
Alignment:
| Q |
8 |
cagcagagagctcagataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacataca |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36552321 |
cagcagagagctaagataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacataca |
36552222 |
T |
|
| Q |
108 |
caaactatttaaaatgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36552221 |
caaactatttaaaatgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagat |
36552122 |
T |
|
| Q |
208 |
tttttaacatttgatgaatgtatattttg |
236 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36552121 |
tttttaacatttgatgaatgtatattttg |
36552093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 36559824 - 36560052
Alignment:
| Q |
8 |
cagcagagagctcagataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacataca |
107 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36559824 |
cagcagagagctaagataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacataca |
36559923 |
T |
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| Q |
108 |
caaactatttaaaatgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36559924 |
caaactatttaaaatgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagat |
36560023 |
T |
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| Q |
208 |
tttttaacatttgatgaatgtatattttg |
236 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36560024 |
tttttaacatttgatgaatgtatattttg |
36560052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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