View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_42 (Length: 252)
Name: NF19007_low_42
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 51433238 - 51432985
Alignment:
| Q |
1 |
attctccaactaaacataataattatgtacccataatctttatttagtgaaaaaagaactata----gatacttcggtggtctactagaaagataacaac |
96 |
Q |
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| T |
51433238 |
attctccaactaaacataataattatgtacccataatctttatctagtgaaaaaagaactatatatagatacttcggtggtctactagaaagataacaac |
51433139 |
T |
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| Q |
97 |
caatttgtattcaattctcaattcttgttaaaggattgttgggtttgactcgaataatttagatcttcaaatttattttggtctctcaaccaacatgaca |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51433138 |
caatttgtattcaattctcaattcttgttaaaggattgttgggtttgacttgaataatttagatcttgaaatttattttggtctctcaaccaacatgaca |
51433039 |
T |
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| Q |
197 |
acaagaacttacttttttatacaggcaaaatgaaaacaaaagcaagttagtgat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51433038 |
acaagaacttacttttttatacaggcaaaatgaaaacataagcaagttagtgat |
51432985 |
T |
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