View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_5 (Length: 465)
Name: NF19007_low_5
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 48 - 450
Target Start/End: Complemental strand, 28195689 - 28195293
Alignment:
| Q |
48 |
gctactccaattttttctctcaaattcgtaattacctatttcaattccttaatcttcttcaatttttcaacataatcatcattattgattattatcatta |
147 |
Q |
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| T |
28195689 |
gctactccaattttttctctcaaattcgtaattacctatttcaattccttaatcttcttcaatttttcaacataatcatcattattgattattatcatta |
28195590 |
T |
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| Q |
148 |
tctttcaatttttctggattattttctgtttctgttatcaacaatgttattataatcttagttttttcaatgcagatcgcatttttcatggcgacgttcg |
247 |
Q |
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| T |
28195589 |
tctttcaatttttctggattattttctgtt------atcaacaatgttattataatcttagttttttcaatgcagatcgcatttttcatggcgacgttcg |
28195496 |
T |
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| Q |
248 |
aactttatcgtaggtcgacgatcggacagtgcttgaccgatactttggatgatctggttcagaatggaactcttagtcctgatcatgccattaagattct |
347 |
Q |
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| T |
28195495 |
aactttatcgtaggtcgacgatcggacagtgcttgaccgatactttggatgatctggttcagaatggaactcttagtcctgatcatgccattaagattct |
28195396 |
T |
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| Q |
348 |
cattcaatttgataaggttggtttcagaattcatgctaggaatctaggattttggtgtttggatctgatctaatattggatagccttacttgtaggtaaa |
447 |
Q |
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| T |
28195395 |
cattcagtttgataaggttgatttcagtattcatgctaggaatctaggattttggtttttagatctgatctaatattggatagccgtacttgtaggtaaa |
28195296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 388
Target Start/End: Complemental strand, 162912 - 162759
Alignment:
| Q |
235 |
atggcgacgttcgaactttatcgtaggtcgacgatcggacagtgcttgaccgatactttggatgatctggttcagaatggaactcttagtcctgatcatg |
334 |
Q |
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| T |
162912 |
atggcgacgttcgaactttatcgtaggtcgacaatcggaatgtgcctcactgagactttggacgagatggttcagaatggaactcttagtcctgagattg |
162813 |
T |
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| Q |
335 |
ccattaagattctcattcaatttgataaggttggtttcagaattcatgctagga |
388 |
Q |
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| T |
162812 |
cgattcaggttctcgttcagtttgataaggtaggttttggaattggtgctagga |
162759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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