View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_8 (Length: 417)
Name: NF19007_low_8
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 17 - 336
Target Start/End: Complemental strand, 5017519 - 5017200
Alignment:
| Q |
17 |
cagccattaccattgaatgtctgaaaaatgggagggatggttgctccgaacagctgagtcggctgaaatacctgagccccttgttgaggatatggtaact |
116 |
Q |
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| T |
5017519 |
cagccattaccattgaatgtctgaaaaatgggagggatgtttgctccgaacagctgagtcggctgaaatacctgcgccccttgttgaggatatggtaact |
5017420 |
T |
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| Q |
117 |
gctgctgccatggtgcttgagtggcagtctgaggaaaacaaggccactgaaacattgatggttgttgaggatttgagttaggcacattgtcaggcgaaga |
216 |
Q |
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| T |
5017419 |
gctgctgccatggtgcttgagtggcagtctgaggaaaacaaggccaatgaaacattgatggttgttgaggatttgagttaggcacattgtcaggcgaata |
5017320 |
T |
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| Q |
217 |
attactactactgttgctgtcaagagccatatctggttcaactttgtcttgcttgttctgttaatcatattcatcttaataaaatgaaaatggggcgaat |
316 |
Q |
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| T |
5017319 |
attactactactgttgctgtcaagagccatatctggttcaactttgtcttgcttgttctgttaatcatattcatcttaataaaatgaaaatggggcgaat |
5017220 |
T |
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| Q |
317 |
tgaaatagacaaaaatgtaa |
336 |
Q |
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| T |
5017219 |
tgaaatagacaaaactgtaa |
5017200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 5016750 - 5016666
Alignment:
| Q |
332 |
tgtaagtatacaattgtcccaatttgttagaaataataaagatgttaaaagttatttttaataaatacatcattagcatttcatct |
417 |
Q |
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| T |
5016750 |
tgtaagtatacaattgtctcaatttgttagaaataataaaaatgttaaaagtta-ttttaataaatacatcattagcatttcatct |
5016666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 5005599 - 5005553
Alignment:
| Q |
17 |
cagccattaccattgaatgtctgaaaaatgggagggatggttgctcc |
63 |
Q |
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| T |
5005599 |
cagccattaacattgaatgtctgaaaaatgggagggatatttgctcc |
5005553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 5005339 - 5005292
Alignment:
| Q |
259 |
tttgtcttgcttgttctgttaatcatattcatcttaataaaatgaaaa |
306 |
Q |
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| T |
5005339 |
tttgtcctgcgtgttctgctaatcatattcatcttaatcaaatgaaaa |
5005292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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