View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19007_low_9 (Length: 412)
Name: NF19007_low_9
Description: NF19007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19007_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 112 - 398
Target Start/End: Complemental strand, 5016609 - 5016325
Alignment:
| Q |
112 |
aagaaatagaagattgaacatattggtagaaataacacaaaaataaaataaaataccaggggttcgtgattcttatccttgttcttgatttccatagtga |
211 |
Q |
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| T |
5016609 |
aagaaatagaaaattgaacatattggtagaaataacacaaaaataaaataaaataccaggggttcgtgattcttatccttgttcttggtttccatagtga |
5016510 |
T |
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| Q |
212 |
gggatattcatataaggtacgagtgttacaattataacctagagtgaagtatagccaattggtggcaaactgtgaattcaagcattaagggttttgacca |
311 |
Q |
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| T |
5016509 |
gggatattcgtataaggtacgagtgttacaactataacctagagtgaagtatagccaattggtggcaaactgtgaattcaagca-taagggttttgacca |
5016411 |
T |
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| Q |
312 |
aagtccaaacggcacatatgaaagtaggaaatggatttggtgtgactacttggttggatactcaaagtgttgttttagattttgtct |
398 |
Q |
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| T |
5016410 |
aagtccaaacggcacatatgaaagtaggaaatggatttggtgtgactacttggttggatactc-aagtgttgttttagattttgtct |
5016325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5016675 - 5016606
Alignment:
| Q |
1 |
catttcatcttcaaatgcaaatgtctcaaatctcgtcattaacaaagctaaaacgaaggagaaagcgaaga |
71 |
Q |
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| T |
5016675 |
catttcatcttcaaatgcaaatgtctcaaatctcgtcattaac-aagctaaaacgaaggagaaagcgaaga |
5016606 |
T |
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