View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19008_low_1 (Length: 367)

Name: NF19008_low_1
Description: NF19008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19008_low_1
NF19008_low_1
[»] chr4 (37 HSPs)
chr4 (211-343)||(425515-425646)
chr4 (145-343)||(37348749-37348947)
chr4 (144-326)||(55826911-55827093)
chr4 (144-343)||(1724581-1724780)
chr4 (144-339)||(6382550-6382744)
chr4 (144-339)||(7608595-7608789)
chr4 (98-183)||(425434-425519)
chr4 (143-343)||(26564455-26564655)
chr4 (144-343)||(4766586-4766785)
chr4 (144-343)||(11027697-11027895)
chr4 (144-327)||(47550640-47550823)
chr4 (144-326)||(11123156-11123337)
chr4 (29-81)||(425325-425377)
chr4 (147-343)||(19534083-19534279)
chr4 (176-339)||(5902890-5903052)
chr4 (176-339)||(31918836-31918998)
chr4 (176-343)||(37107069-37107235)
chr4 (144-283)||(44887531-44887670)
chr4 (176-326)||(9229939-9230089)
chr4 (177-343)||(47239657-47239822)
chr4 (144-339)||(21423486-21423680)
chr4 (187-341)||(32585157-32585311)
chr4 (188-342)||(42774430-42774583)
chr4 (144-343)||(48459111-48459304)
chr4 (176-295)||(6482344-6482463)
chr4 (145-343)||(29755602-29755800)
chr4 (218-270)||(43351775-43351827)
chr4 (176-295)||(44317201-44317320)
chr4 (144-264)||(50509874-50509995)
chr4 (144-304)||(8844153-8844312)
chr4 (144-304)||(8857117-8857276)
chr4 (145-305)||(39046583-39046743)
chr4 (280-339)||(43893009-43893067)
chr4 (144-326)||(24475156-24475338)
chr4 (298-343)||(6482308-6482352)
chr4 (247-287)||(19549287-19549327)
chr4 (294-342)||(42299565-42299613)
[»] scaffold0014 (1 HSPs)
scaffold0014 (144-343)||(14415-14613)
[»] chr7 (43 HSPs)
chr7 (142-343)||(30650252-30650453)
chr7 (176-339)||(45886040-45886202)
chr7 (144-343)||(7779631-7779830)
chr7 (144-321)||(45709144-45709321)
chr7 (175-343)||(37578918-37579085)
chr7 (176-343)||(18826142-18826307)
chr7 (189-343)||(23328279-23328432)
chr7 (176-337)||(2632245-2632404)
chr7 (175-343)||(46127433-46127601)
chr7 (144-339)||(44986172-44986366)
chr7 (196-326)||(18125515-18125645)
chr7 (144-343)||(5376710-5376908)
chr7 (144-295)||(17851489-17851640)
chr7 (196-339)||(35074144-35074286)
chr7 (190-343)||(16865839-16865991)
chr7 (143-343)||(38152523-38152724)
chr7 (176-336)||(27850601-27850760)
chr7 (231-343)||(41741720-41741831)
chr7 (144-339)||(21702303-21702497)
chr7 (220-343)||(17885146-17885269)
chr7 (148-266)||(25783248-25783365)
chr7 (144-343)||(24752657-24752854)
chr7 (219-291)||(31393751-31393823)
chr7 (144-343)||(10072112-10072310)
chr7 (220-343)||(17884932-17885055)
chr7 (244-339)||(25905352-25905446)
chr7 (144-308)||(25980229-25980392)
chr7 (219-327)||(44794312-44794420)
chr7 (196-343)||(26004792-26004938)
chr7 (220-295)||(37196306-37196381)
chr7 (219-337)||(43217959-43218078)
chr7 (176-325)||(41103299-41103449)
chr7 (244-285)||(8906939-8906980)
chr7 (245-329)||(23475607-23475691)
chr7 (208-308)||(44845494-44845594)
chr7 (176-291)||(33840730-33840845)
chr7 (176-343)||(43507089-43507255)
chr7 (144-278)||(10996182-10996316)
chr7 (149-343)||(44734629-44734823)
chr7 (233-326)||(5432323-5432416)
chr7 (244-337)||(12980098-12980191)
chr7 (220-289)||(23533988-23534057)
chr7 (183-291)||(42005564-42005672)
[»] chr6 (15 HSPs)
chr6 (144-343)||(2366945-2367143)
chr6 (144-327)||(10188360-10188543)
chr6 (176-343)||(11762097-11762263)
chr6 (196-339)||(14254631-14254773)
chr6 (144-339)||(3484198-3484392)
chr6 (176-343)||(32853495-32853661)
chr6 (176-343)||(32052707-32052874)
chr6 (144-343)||(24225320-24225516)
chr6 (244-343)||(12309300-12309397)
chr6 (144-295)||(12141016-12141167)
chr6 (200-339)||(14244923-14245061)
chr6 (144-295)||(27534314-27534465)
chr6 (176-285)||(14505750-14505859)
chr6 (176-338)||(12678369-12678534)
chr6 (143-288)||(9442267-9442412)
[»] chr5 (26 HSPs)
chr5 (144-341)||(33862455-33862659)
chr5 (196-343)||(6093377-6093523)
chr5 (148-326)||(38006758-38006936)
chr5 (176-343)||(40517458-40517623)
chr5 (144-343)||(30996217-30996414)
chr5 (176-337)||(20973762-20973923)
chr5 (144-343)||(22695173-22695371)
chr5 (175-339)||(27088626-27088790)
chr5 (144-269)||(2413063-2413189)
chr5 (144-343)||(6369313-6369511)
chr5 (144-341)||(3572843-3573040)
chr5 (176-289)||(17853605-17853717)
chr5 (176-339)||(5908964-5909120)
chr5 (176-343)||(12447033-12447200)
chr5 (178-325)||(42987766-42987913)
chr5 (200-343)||(12834847-12834990)
chr5 (176-271)||(1218438-1218533)
chr5 (200-343)||(12866824-12866966)
chr5 (146-343)||(3564997-3565186)
chr5 (165-343)||(13402274-13402452)
chr5 (175-289)||(35311467-35311581)
chr5 (201-271)||(36579594-36579664)
chr5 (298-343)||(35194260-35194304)
chr5 (199-339)||(2984823-2984962)
chr5 (176-228)||(33420570-33420622)
chr5 (219-339)||(42717902-42718020)
[»] chr8 (28 HSPs)
chr8 (144-343)||(17468875-17469074)
chr8 (144-343)||(34301425-34301623)
chr8 (176-339)||(24927600-24927762)
chr8 (196-343)||(34776133-34776279)
chr8 (176-343)||(2076107-2076273)
chr8 (144-343)||(11255275-11255474)
chr8 (190-343)||(24870294-24870446)
chr8 (144-339)||(28977389-28977583)
chr8 (144-339)||(32302679-32302873)
chr8 (144-326)||(4231006-4231188)
chr8 (189-343)||(24568603-24568756)
chr8 (275-343)||(1012367-1012435)
chr8 (144-324)||(34139065-34139244)
chr8 (148-343)||(39445838-39446027)
chr8 (143-286)||(17220335-17220478)
chr8 (176-337)||(34021127-34021287)
chr8 (273-343)||(31325013-31325082)
chr8 (153-270)||(18151083-18151200)
chr8 (144-284)||(9642696-9642836)
chr8 (176-316)||(20399287-20399427)
chr8 (231-302)||(28077299-28077370)
chr8 (144-284)||(6388894-6389035)
chr8 (231-343)||(36132186-36132297)
chr8 (143-262)||(1012249-1012367)
chr8 (218-308)||(17084475-17084565)
chr8 (231-288)||(9476393-9476450)
chr8 (219-326)||(15174159-15174267)
chr8 (295-339)||(35215245-35215289)
[»] chr3 (32 HSPs)
chr3 (176-343)||(31127065-31127232)
chr3 (176-343)||(54316794-54316961)
chr3 (144-339)||(4557579-4557774)
chr3 (144-289)||(41937373-41937518)
chr3 (144-343)||(34025578-34025771)
chr3 (176-342)||(52197803-52197969)
chr3 (144-327)||(7470064-7470246)
chr3 (187-342)||(17146422-17146576)
chr3 (144-343)||(34154035-34154233)
chr3 (144-343)||(44638894-44639092)
chr3 (176-343)||(49025333-49025498)
chr3 (144-339)||(23547247-23547447)
chr3 (143-339)||(29283954-29284149)
chr3 (144-343)||(53631520-53631722)
chr3 (144-295)||(39728301-39728452)
chr3 (244-343)||(44179046-44179144)
chr3 (176-343)||(49579715-49579881)
chr3 (144-343)||(44107063-44107268)
chr3 (144-308)||(44252360-44252524)
chr3 (176-339)||(22536118-22536281)
chr3 (176-343)||(55438950-55439116)
chr3 (143-321)||(4016326-4016503)
chr3 (259-343)||(43582311-43582394)
chr3 (188-343)||(52572277-52572426)
chr3 (190-343)||(29841972-29842124)
chr3 (187-343)||(23580489-23580645)
chr3 (144-327)||(30616590-30616773)
chr3 (144-271)||(42758019-42758146)
chr3 (244-339)||(44953710-44953804)
chr3 (143-289)||(23154331-23154477)
chr3 (144-322)||(48306827-48307005)
chr3 (144-213)||(44162403-44162472)
[»] chr1 (36 HSPs)
chr1 (144-339)||(20774251-20774445)
chr1 (176-342)||(24710509-24710674)
chr1 (144-305)||(40087766-40087927)
chr1 (144-339)||(28297552-28297746)
chr1 (176-343)||(34610725-34610891)
chr1 (144-343)||(13390074-13390267)
chr1 (144-343)||(29871555-29871753)
chr1 (176-343)||(49742191-49742358)
chr1 (144-343)||(50426925-50427123)
chr1 (146-343)||(44615747-44615943)
chr1 (144-343)||(36187491-36187691)
chr1 (220-343)||(29936112-29936234)
chr1 (146-343)||(44792626-44792823)
chr1 (144-343)||(45866456-45866655)
chr1 (144-289)||(9983210-9983355)
chr1 (144-343)||(5180670-5180863)
chr1 (143-304)||(32594514-32594675)
chr1 (143-343)||(17092230-17092430)
chr1 (187-343)||(17134609-17134765)
chr1 (144-324)||(23966477-23966657)
chr1 (171-326)||(35937104-35937259)
chr1 (144-271)||(51421514-51421641)
chr1 (220-340)||(17516095-17516216)
chr1 (175-343)||(24237033-24237199)
chr1 (176-295)||(23493643-23493762)
chr1 (144-270)||(16433504-16433630)
chr1 (199-337)||(39615976-39616114)
chr1 (294-343)||(51421628-51421676)
chr1 (273-337)||(13020436-13020499)
chr1 (142-289)||(38686270-38686417)
chr1 (297-343)||(42439942-42439987)
chr1 (297-343)||(49251045-49251090)
chr1 (220-289)||(16903199-16903268)
chr1 (283-343)||(12494767-12494827)
chr1 (143-271)||(25155238-25155366)
chr1 (32-80)||(34289201-34289249)
[»] chr2 (24 HSPs)
chr2 (144-343)||(13830355-13830553)
chr2 (144-339)||(30846564-30846758)
chr2 (142-343)||(10208701-10208901)
chr2 (144-339)||(36128383-36128577)
chr2 (162-343)||(24414403-24414583)
chr2 (176-343)||(6028160-6028326)
chr2 (196-326)||(13705649-13705779)
chr2 (176-343)||(37999136-37999301)
chr2 (175-326)||(45256474-45256625)
chr2 (176-264)||(16227039-16227127)
chr2 (200-289)||(35336292-35336381)
chr2 (176-343)||(37319596-37319760)
chr2 (244-343)||(8916208-8916305)
chr2 (144-339)||(7314924-7315119)
chr2 (247-326)||(45115303-45115382)
chr2 (187-297)||(18106395-18106505)
chr2 (201-343)||(42798260-42798401)
chr2 (299-343)||(10920420-10920463)
chr2 (176-295)||(9632049-9632168)
chr2 (144-253)||(31942515-31942624)
chr2 (299-341)||(31942457-31942499)
chr2 (231-308)||(4427611-4427688)
chr2 (176-285)||(15546345-15546454)
chr2 (221-278)||(35248776-35248833)
[»] scaffold0036 (1 HSPs)
scaffold0036 (144-326)||(33014-33196)
[»] scaffold0189 (1 HSPs)
scaffold0189 (144-343)||(3877-4075)
[»] scaffold0097 (1 HSPs)
scaffold0097 (231-326)||(33289-33384)
[»] scaffold1630 (1 HSPs)
scaffold1630 (143-343)||(1241-1438)
[»] scaffold0519 (1 HSPs)
scaffold0519 (144-336)||(9921-10113)
[»] scaffold0135 (1 HSPs)
scaffold0135 (176-326)||(35805-35955)
[»] scaffold0095 (1 HSPs)
scaffold0095 (148-343)||(32800-32989)
[»] scaffold0294 (1 HSPs)
scaffold0294 (144-343)||(14396-14594)
[»] scaffold0022 (1 HSPs)
scaffold0022 (144-289)||(90216-90361)
[»] scaffold0244 (1 HSPs)
scaffold0244 (220-302)||(4954-5036)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 211 - 343
Target Start/End: Original strand, 425515 - 425646
Alignment:
Q  211 tacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||    
T  425515 tacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcat-tccgtccacgacggatttgggtatccccgtctcatccccgtccctg 425613  T
Q  311 cattgaataattttttatattaaaaaatagaag 343  Q
     ||||||||||||||||||||||||||||||||    
T  425614 tattgaataattttttatattaaaaaatagaag 425646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 145 - 343
Target Start/End: Original strand, 37348749 - 37348947
Alignment:
Q  145 aggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggag 244  Q
    ||||||||||||| || ||||| || ||   ||||||||||||||||||| |||||||||||  ||||| ||  ||||||||||  |||| |||| || |    
T  37348749 aggcatgacaatggggcggggtagggacgggttttacattctccgtccccatacccgattctcttatacttacctgttaccctacccatacccaacgggg 37348848  T
Q  245 atgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||||||| |||| |||||  ||||| |||||| |||||||||| ||| |||||||||||||| ||||||||||| | ||| || |||||||||||||    
T  37348849 atgagaaattgaacttcatcctcgtccccgacgggttcgggtatccccgcctcatccccgtccccgcattgaataactgtttttaataaaaaatagaag 37348947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 55827093 - 55826911
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| |||| |||||| |||||| ||| ||||||||||  ||||||||||||     
T  55827093 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccataccggattctcatatacttatctgttaccctacccatatccaatggg 55826994  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    |||||||||| ||| |||||| |||||| |||||| |||||||||| |||   |||||||||||| |||||||||||||||||    
T  55826993 gatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccgctccatccccgtccccgcattgaataatttttt 55826911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 1724780 - 1724581
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||| ||||| |||||||  ||||||||||| |||||  |||  |||||||||  |||| |||| ||     
T  1724780 taggcatggcaatggggcggggtggggacgggttttgcattccccgtcccaatacccgattctcatatatttatccgttaccctacccatacccaacggg 1724681  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| |||||||||| ||||||  ||||| || ||||||| ||| ||||||||||||||  |||||||||||||||| || |||||||||||||    
T  1724680 gatgagaaattgaacctcatccccgtccctgacgggtttgggtatccccgcctcatccccgtccccacattgaataattttttttaataaaaaatagaag 1724581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 6382744 - 6382550
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| ||| |||| ||||||||||| |||||| ||   |||||||||  ||||||||| ||     
T  6382744 taggcatggcaatggggcggggtggggaccggttttaccttccccgcccccatacccgattctcatatacttacccgttaccctacccatatccaacggg 6382645  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| |||||| |||||| | |||| |||||||||| ||| | |||||||||||| ||||||||||||||||| || |||||||||    
T  6382644 gatgagaaattgaatctcatccccgtccccaacgggttcgggtatccccgccccatccccgtccccgcattgaataatttttt-tagtaaaaaata 6382550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 339
Target Start/End: Original strand, 7608595 - 7608789
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||  ||||||||||  ||||||||| ||     
T  7608595 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttacctgttaccctacccatatccaacggg 7608694  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| | |||| |||||| ||| || |||||||||| |||   |||||||||||| ||||||||||||||||| || |||||||||    
T  7608695 gatgagaaattgaatcccatccccgtccccgaggggttcgggtatccccgcaccatccccgtccccgcattgaataatttttt-taataaaaaata 7608789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 425434 - 425519
Alignment:
Q  98 ggttagtttgaatgttgggaaatgaagatgtgaggtgaggtgcttataggcatgacaatgaggtggggtgggtacaaattttacat 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| |||||  ||||||||    
T  425434 ggttagtttgaatgttgggaaatgaagatgtgaggtgaggtgcttataggcatcgcaatgaggcggggtgagtacatgttttacat 425519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 143 - 343
Target Start/End: Original strand, 26564455 - 26564655
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||| ||||| || |||||||| ||   |||||||||  |||||| | |||| |||||| |||||| ||  ||||||||||  ||||||||| |     
T  26564455 ataggcatggcaatggggcggggtggggacgggttttacatttcccgtcctcatacctgattctcatatacttacctgttaccctacccatatccaacga 26564554  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaa 342  Q
     |||||||||| ||| ||||||||||||| | |||| |||||||||||||  | ||||| | |||| | ||||||||||||||| || ||||||||||||    
T  26564555 ggatgagaaattgaatctcatctccgtccccaacgggttcgggtatctccaccccatcctcatccccgtattgaataattttttttaataaaaaatagaa 26564654  T
Q  343 g 343  Q
    |    
T  26564655 g 26564655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 4766785 - 4766586
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| |||||||| |||||||| ||   |||||| ||| |||||||| || |||||||| |||||| ||  ||||||||||| |||| |||| |||    
T  4766785 taggcatggcaatgaggcggggtggggacgtgttttaccttccccgtccccatatccgattctcatatacttacctgttaccctatccatacccaacgga 4766686  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| ||||||  ||||| ||||||||||   | ||||||||| | || |||| ||||||  |||| || |||||||||||||    
T  4766685 gatgagaaattgaatctcatccccgtccttgacgggttcgggtatccttgcctcatccccattcccgcatcgaataaacttttttaataaaaaatagaag 4766586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 11027697 - 11027895
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||| | |||| |||||| |||||| ||   |||||||||  |||| || | ||     
T  11027697 taggcatggcaatggggcggggtggggacgggttttaccttccccgtcctcatacctgattctcatatacttactcgttaccctacccataccctacggg 11027796  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| |||||| |||| | |||||||||| ||| |||||||||||||| ||||||||||||||||| || |||||||||||||    
T  11027797 gatgagaaattgaatctcatccccgtccccgacaggttcgggtatccccgcctcatccccgtccccgcattgaataatttttt-taataaaaaatagaag 11027895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 327
Target Start/End: Complemental strand, 47550823 - 47550640
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| |||||||||||  ||||| ||   |||||||||| |||| |||| ||     
T  47550823 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcgtatacttacccgttaccctatccatacccaacggg 47550724  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttta 327  Q
    |||||||||| ||| |||||    |||| ||||||||||||||||| ||| | |||||||||||| |||||||||| |||||||    
T  47550723 gatgagaaattgaatctcattcttgtccccgacggattcgggtatccccgccccatccccgtccccgcattgaatattttttta 47550640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 11123337 - 11123156
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||| ||| ||||||||||| |||||| ||  ||||||||||  ||||||||| |||    
T  11123337 taggcatggcaatggggcggggtggggacgggttttaccttccccgttcccatacccgattctcatatacttacctgttaccctacccatatccaacgga 11123238  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    ||||| |||| ||| | |||| |||||| |||||| |||||||||| ||| | ||||| || ||| |||||||||||||||||    
T  11123237 gatgataaattgaatcacatccccgtccccgacgggttcgggtatccccgccccatcctcgaccc-gcattgaataatttttt 11123156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 425325 - 425377
Alignment:
Q  29 ccaccaaaagcttagggctgttatgttggttgaggcgattgtgatgcaaatca 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  425325 ccaccaaaagcttagggctgttatgttggttgaggcgattgtgatgcaaatca 425377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 343
Target Start/End: Original strand, 19534083 - 19534279
Alignment:
Q  147 gcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagat 246  Q
    ||||||||||| ||||||||||| |    |||||||| | |||| ||| ||||||||||| |||||| ||    ||||||||  ||||||||| || |||    
T  19534083 gcatgacaatggggtggggtggggatgtgttttacataccccgttcccatacccgattctcatatacttactcattaccctacccatatccaacggggat 19534182  T
Q  247 gagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    | ||||| ||||| |||| | |||| | |||| || ||||||||||  ||||||||| |||| ||||||||||||||||  || |||||||||||||    
T  19534183 gcgaaattgaaccacatccctgtccccaacgggtttgggtatctccacctcatccccatccccgcattgaataatttttattaataaaaaatagaag 19534279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 5903052 - 5902890
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| || ||||| ||||||||||| |||||| ||   |||||||||  ||||||||| |  |||||||||| ||| | |||| ||||||  ||    
T  5903052 ttttaccttccccatccccatacccgattctcatatacttacccgttaccctacccatatccaacgaggatgagaaattgaatcccatccccgtccctga 5902953  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    ||| |||||||||| ||| | |||| ||||||| ||||||||||||||||| || |||||||||    
T  5902952 cgggttcgggtatccccgccccatctccgtccccgcattgaataatttttt-taataaaaaata 5902890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 31918998 - 31918836
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||| |||| |||| || |||||||||| ||| | |||| |||||| |||    
T  31918998 ttttaccttccccgtccccatacccgattctcatatacttacccgttaccctatccatacccaacggggatgagaaattgaatcccatccccgtccccga 31918899  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
     || |||||||||| ||| | ||| ||  |||| ||||||||||||||||| || |||||||||    
T  31918898 tgggttcgggtatccccgccccattcctttccccgcattgaataatttttt-taataaaaaata 31918836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 37107069 - 37107235
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||||||| || ||| | |||| |||||| || ||| ||  |||||||||| ||||||  || ||  ||||||||| |||||||||| |||||| |||    
T  37107069 ttttacattccccatcctcatacctgattcttatgtacttacctgttaccctactcatatttaacgggaatgagaaattgaacctcatccccgtcctcga 37107168  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| ||| || ||||||||||   ||||||||| |||||| || |||||||||||||    
T  37107169 cgggttcgggtatccccgccttatccccgtcctgccattgaatattttttt-taataaaaaatagaag 37107235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 44887531 - 44887670
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| |   ||||||| ||| | |||| | ||||||||||| |||||| ||  ||||||||||| ||||||||||||     
T  44887531 taggcatggcaatggggcggggtggggatggattttaccttccctgtcctcatacccgattctcatatacttacctgttaccctatccatatccaatggg 44887630  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcg 283  Q
    |||||||||| ||| |||||| |||||| |||||| ||||    
T  44887631 gatgagaaattgaatctcatccccgtccccgacgggttcg 44887670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 326
Target Start/End: Original strand, 9229939 - 9230089
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    ||||| |||| |||||||| ||||||||||  |||||| |    ||||||||| |||||||||| || |||||||||| ||||| |||| |||| | |||    
T  9229939 ttttatattccccgtccccatacccgattcacatatacttgcccgttaccctactcatatccaacggggatgagaaattgaaccacatccccgttcccga 9230038  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    ||| |||||||||  |||  ||||| || |||| |||||||||||||||||    
T  9230039 cgggttcgggtattcccgcttcatctccatccccgcattgaataatttttt 9230089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 343
Target Start/End: Complemental strand, 47239822 - 47239657
Alignment:
Q  177 tttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgac 276  Q
    ||||| ||| |||||||| || |||||||| |||||  |||  |||||||||| |||||| || || |||||||||| ||| |||||| |||||| ||||    
T  47239822 tttaccttccccgtccccatatccgattctcatatatttatccgttaccctatccatatcaaacggggatgagaaattgaatctcatccccgtccccgac 47239723  T
Q  277 ggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||| |||||| |||  | ||||||| | || | || |||||||||||| || |||||||||||||    
T  47239722 ggatttgggtat-tcccacccatccccattcccgtatcgaataattttttttaataaaaaatagaag 47239657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 339
Target Start/End: Original strand, 21423486 - 21423680
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| |||  |||||||||   ||||||| ||||||||||| |||||| ||   ||||||||| |||||  |||  |     
T  21423486 taggcatggcaatggggcggggtggggacaggttttacatttctcgtccccatacccgattctcatatacttacccgttaccctactcatacacaacagg 21423585  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    ||| |||||| |||  ||||  |||||| |||  | |||||||||| | | | |||||||||||||||||||||||||||||| || |||||||||    
T  21423586 gataagaaattgaatttcattcccgtccccgataggttcgggtatccctgccccatccccgtccctgcattgaataatttttt-taataaaaaata 21423680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 341
Target Start/End: Original strand, 32585157 - 32585311
Alignment:
Q  187 ccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggt 286  Q
    |||||||| || |||||||| || ||| ||  |||||||||| ||||||||||  | |||||||||| ||| | |||| ||| || |||| | |||||||    
T  32585157 ccgtccccatatccgattctcatgtacttacttgttaccctactcatatccaactg-gatgagaaattgaatcacatccccgaccccgacaggttcgggt 32585255  T
Q  287 atctccgtctcatccccgtccctgcattgaata-attttttatattaaaaaataga 341  Q
    |||  || |||||||||||||| |||||||||| ||||||| || |||||||||||    
T  32585256 atccacgcctcatccccgtccccgcattgaatatattttttttaataaaaaataga 32585311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 342
Target Start/End: Original strand, 42774430 - 42774583
Alignment:
Q  188 cgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggta 287  Q
    ||||||| || || ||||| |||||| ||||||||| ||||  |||| ||||||| ||||||||||  || |||||| |||||| |||||| ||||||||    
T  42774430 cgtccccatatccaattctcatatacttatatgttatcctacccatacccaatggggatgagaaattcaatctcatccccgtcc-cgacgggttcgggta 42774528  T
Q  288 tctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaa 342  Q
    || |   ||||||| | |||| | || |||||||||||| || ||||||||||||    
T  42774529 tcccaacctcatcctcatccccgtatcgaataattttttttaataaaaaatagaa 42774583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 48459111 - 48459304
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| |  |||||||| ||   |||||| |||||| ||||| ||||||||||| |||||| ||   ||||||||| |||||  ||| ||     
T  48459111 taggcatgacaatgggaaggggtggggacgggttttaccttctccatccccatacccgattctcatatacttacccgttaccctactcatactcaacggg 48459210  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| |||||| | | || |||||||||| ||  | |||||||||      || |||||||||||| || |||||||||||||    
T  48459211 gatgagaaattgaatctcatccccgtccccaatgggttcgggtatccccaccccatccccgt------atcgaataattttttttaataaaaaatagaag 48459304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 6482463 - 6482344
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||||||| |||| ||| ||||||||||| |||||| ||   |||||||||  ||||||||| || |||||||||| |||||||||  |||||  |||    
T  6482463 ttttacattccccgttcccatacccgattctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaacctcatgcccgtctccga 6482364  T
Q  276 cggattcgggtatctccgtc 295  Q
    ||  |||||||||| |||||    
T  6482363 cgagttcgggtatccccgtc 6482344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 343
Target Start/End: Complemental strand, 29755800 - 29755602
Alignment:
Q  145 aggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggag 244  Q
    ||||||| ||||| ||  ||||||| |||  |||||||||| |||||||| ||||||||||| ||| || ||   |||||  ||  |||| ||||||  |    
T  29755800 aggcatggcaatggggcagggtggggacaggttttacattccccgtccccatacccgattctcatacacttacccgttactttacccatacccaatgagg 29755701  T
Q  245 atgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    || |||||| |||||||||| ||||||  || || ||||| |||| ||| | |||||| ||||  ||||||||||| ||||| || |||||||| ||||    
T  29755700 ataagaaattgaacctcatccccgtccctgaagggttcggatatccccgccccatccctgtcctcgcattgaataaatttttttaataaaaaattgaag 29755602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 43351827 - 43351775
Alignment:
Q  218 atgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtc 270  Q
    |||||| |||||||||||||||||||||||||||||||||  ||||| |||||    
T  43351827 atgttatcctattcatatccaatggagatgagaaatcgaatttcatccccgtc 43351775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 295
Target Start/End: Original strand, 44317201 - 44317320
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||  ||||||||||  ||||  ||| || |||||||||| ||| | |||| || ||| |||    
T  44317201 ttttaccttccccgtccccatacccgattctcatatacttacctgttaccctacccatactcaacggggatgagaaattgaatcccatccccatccccga 44317300  T
Q  276 cggattcgggtatctccgtc 295  Q
    ||| |||||||||| |||||    
T  44317301 cgggttcgggtatccccgtc 44317320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 50509995 - 50509874
Alignment:
Q  144 taggcatgacaatgaggtgggg-tgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    |||||||| ||||| ||||||| |||| ||| ||||||||||| |||||| | | ||||||||| ||||||  ||   ||||| || ||||| |||| ||    
T  50509995 taggcatggcaatggggtgggggtggggacagattttacattccccgtcctcatgcccgattctcatatactaattcattaccttactcatacccaaagg 50509896  T
Q  243 agatgagaaatcgaacctcatc 264  Q
     |||||||||| ||||||||||    
T  50509895 ggatgagaaattgaacctcatc 50509874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 304
Target Start/End: Complemental strand, 8844312 - 8844153
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    ||||| ||||||||||| ||||||||| |   |||||| ||| |||||||| ||||| | ||  |||||| |||  |||||||||| | || |||  ||     
T  8844312 taggcttgacaatgaggcggggtgggt-cgggttttaccttccccgtccccataccctaatcccatatacttatcagttaccctatccgtagccagcggg 8844214  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccg 304  Q
    ||||||||||| || |||||| ||||||  ||||| |||||||||  ||| ||||||||||    
T  8844213 gatgagaaatcaaatctcatccccgtccctgacgggttcgggtattcccgcctcatccccg 8844153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 304
Target Start/End: Complemental strand, 8857276 - 8857117
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    ||||| ||||||||||| ||||||||| |   |||||| ||| |||||||| ||||| | ||  |||||| |||  |||||||||| | || |||  ||     
T  8857276 taggcttgacaatgaggcggggtgggt-cgggttttaccttccccgtccccataccctaatcccatatacttatcagttaccctatccgtagccagcggg 8857178  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccg 304  Q
    ||||||||||| || |||||| ||||||  ||||| |||||||||  ||| ||||||||||    
T  8857177 gatgagaaatcaaatctcatccccgtccctgacgggttcgggtattcccgcctcatccccg 8857117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 305
Target Start/End: Original strand, 39046583 - 39046743
Alignment:
Q  145 aggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggag 244  Q
    ||||||||||||| |  |||||||| ||   |||||| ||  |||||||| ||||||||||| |||||| ||   |||| ||||   |||||||| || |    
T  39046583 aggcatgacaatgggacggggtggggacgggttttacctttcccgtccccatacccgattcttatatacttactcgttatcctacctatatccaacgggg 39046682  T
Q  245 atgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgt 305  Q
    ||||||||| ||| |  ||| |||||| |||||| |||||||||||||  | |||||||||    
T  39046683 atgagaaattgaatcgtatccccgtccccgacgggttcgggtatctccaccccatccccgt 39046743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 43893009 - 43893067
Alignment:
Q  280 ttcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| | |||||||||||| ||||||||||||||||| || |||||||||    
T  43893009 ttcgggtatccccgccccatccccgtccccgcattgaataatttttt-taataaaaaata 43893067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 24475338 - 24475156
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| ||||||||||  |  | |||||| ||||||||| || |||   | ||| | |||| ||| |||||| |||| |||||||||   |    
T  24475338 taggcatgacaatggggtggggtggagatgagttttaccttctccgtctccatactttactcttaaatacttatctgttactctatccatatccaacata 24475239  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    ||||| |||||||| |||||| | |||   ||| | |||||||||| ||| ||||| |||  ||||||| || ||||||||||    
T  24475238 gatgataaatcgaatctcatccctgtctttgacaggttcgggtatccccgcctcatacccaaccctgcagtggataatttttt 24475156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 6482352 - 6482308
Alignment:
Q  298 atccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||    
T  6482352 atccccgtccccgcattgaataatttttt-taataaaaaatagaag 6482308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 19549327 - 19549287
Alignment:
Q  247 gagaaatcgaacctcatctccgtccacgacggattcgggta 287  Q
    ||||||||||| |||||| |||||| |||||||||||||||    
T  19549327 gagaaatcgaatctcatccccgtccccgacggattcgggta 19549287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 42299565 - 42299613
Alignment:
Q  294 tctcatccccgtccctgcattgaataattttttatattaaaaaatagaa 342  Q
    |||||| ||||||||||||||||||| |||||| || |||||| |||||    
T  42299565 tctcattcccgtccctgcattgaatacttttttttaataaaaattagaa 42299613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 14613 - 14415
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||  ||||||||||| |||||||| ||||||||||| |||||| ||  ||||||||||  |||| ||||  |     
T  14613 taggcatggcaatggggcggggtggggacggattttacattccccgtccccatacccgattctcatatacttacctgttaccctacccatacccaacagg 14514  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||||| ||||||||||| |||||| |||||||||| ||| | |||||||||||  ||||||||||||||||| || |||||||||||||    
T  14513 gatgagaaattgaaccccatctccgtcc-cgacgggttcgggtatccccgccccatccccgtcctcgcattgaataattttttttaataaaaaatagaag 14415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 142 - 343
Target Start/End: Original strand, 30650252 - 30650453
Alignment:
Q  142 tataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatg 241  Q
    |||||||||| ||||| || |||| ||| ||   |||||| ||| || || || ||||||||||| |||||| ||   |||||||||  ||||||||| |    
T  30650252 tataggcatggcaatggggcggggaggggacgggttttaccttccccatctccatacccgattctcatatacttacccgttaccctacccatatccaacg 30650351  T
Q  242 gagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaataga 341  Q
    | |||||||||| ||| |||||| |||||| |||||| |||||||||| ||| | |||| ||||||| ||||||||||||||||||||||||||||||||    
T  30650352 gggatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccgccccatcaccgtccccgcattgaataattttttatattaaaaaataga 30650451  T
Q  342 ag 343  Q
    ||    
T  30650452 ag 30650453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 45886202 - 45886040
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| ||||| || ||||| ||||| |||||| ||  ||||||||||  ||||||||| || |||||||||| ||| |||||| |||||| |||    
T  45886202 ttttaccttccccgtctccatacccaattctcatatacttacctgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtccccga 45886103  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    ||| |||||||||| ||| | |||| ||||||| ||||||||||||||||| ||||||||||||    
T  45886102 cgggttcgggtatccccgccccatcaccgtccccgcattgaataatttttt-tattaaaaaata 45886040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 7779631 - 7779830
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| ||||||||||| ||   |||||| ||| |||||||| |||||||||||  ||||| ||| ||||||||||  ||||||||| ||     
T  7779631 taggcatggcaatggggtggggtggggacgggttttaccttccccgtccccatacccgattctcgtatacttatctgttaccctacccatatccaacggg 7779730  T
Q  244 gatgagaaatcgaacctcat--ctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaataga 341  Q
    |||||||||| ||| |||||  | |||||| |||||| |||||||||| ||| | ||| |||||||| |||||||||| ||||||| || ||||||||||    
T  7779731 gatgagaaattgaatctcatccccccgtccccgacgggttcgggtatccccgccacat-cccgtccccgcattgaatattttttta-ataaaaaaataga 7779828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 321
Target Start/End: Complemental strand, 45709321 - 45709144
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||||||||||||||| ||  ||||||| || ||||||||| ||| ||||| |||||||  || |||||||||||| |||| ||||  |     
T  45709321 taggcatggcaatgaggtggggtggggacggattttaccttttccgtccccatactcgattatgatatatttacatgttaccctatccatacccaactgg 45709222  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataat 321  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| ||| | |||| |||||||  |||||||||||    
T  45709221 gatgagaaattgaatcccatccccgtcctcgacgggttcgggtatcaccgccccatctccgtccccacattgaataat 45709144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 175 - 343
Target Start/End: Original strand, 37578918 - 37579085
Alignment:
Q  175 attttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacg 274  Q
    ||||||||||| || ||||| ||||||||| | |||||| ||   ||||||||| ||||| |||| || |||||||||| ||||| |||| || ||| ||    
T  37578918 attttacattccccatccccatacccgattatcatatacttacccgttaccctactcatacccaacggggatgagaaattgaaccacatccccatccccg 37579017  T
Q  275 acggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||| |||||||||| | | | |||||||||||| ||||||||||||||||| || |||||||||||||    
T  37579018 acgggttcgggtatccctgccccatccccgtccccgcattgaataatttttt-taataaaaaatagaag 37579085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 18826307 - 18826142
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    ||||||||||| ||||||| ||||||||||| |||||| ||   |||||||||  |||| | || || |||||||||| ||||| |||| |||||| |||    
T  18826307 ttttacattcttcgtccccatacccgattctcatatacttacccgttaccctacccatacctaacggggatgagaaattgaaccccatccccgtccccga 18826208  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| || ||||||| ||| | |||||||||||||||||||||||||||||| || |||||||| ||||    
T  18826207 cgggtttgggtatc-ccgccccatccccgtccctgcattgaataatttttt-taataaaaaattgaag 18826142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 23328279 - 23328432
Alignment:
Q  189 gtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtat 288  Q
    |||||| ||||||||||| |||||| ||  ||||||||||  |||||||||||  ||||||||||  || |||||| |||||  |||||| |||||||||    
T  23328279 gtccccttacccgattctcatatacttacttgttaccctacacatatccaatgtggatgagaaattaaatctcatccccgtctccgacgggttcgggtat 23328378  T
Q  289 ctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    | ||| |||||||| ||||||||||| ||| ||||||| || |||||||||||||    
T  23328379 ccccgcctcatccctgtccctgcattcaat-attttttttaataaaaaatagaag 23328432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 337
Target Start/End: Complemental strand, 2632404 - 2632245
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    ||||||||||||||||||  |||| |||||| |||||| ||   |||||||||  |||| |||| || |||||||||| |||||||||| |||||  |||    
T  2632404 ttttacattctccgtccca-tacctgattctcatatacttacccgttaccctac-catacccaacggggatgagaaattgaacctcatccccgtctccga 2632307  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaa 337  Q
    | | |||||||||| ||| | |||||||||||||||||||||||||||||| || |||||||    
T  2632306 caggttcgggtatccccgccccatccccgtccctgcattgaataattttttttaataaaaaa 2632245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 175 - 343
Target Start/End: Complemental strand, 46127601 - 46127433
Alignment:
Q  175 attttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacg 274  Q
    ||||||||||| || || || ||||| ||||| |||||| ||  ||||||||||| || || ||| || |||||||||| |||||||||| || ||| ||    
T  46127601 attttacattccccatctccatacccaattctcatatacttacctgttaccctatccacattcaacggggatgagaaattgaacctcatccccatccccg 46127502  T
Q  275 acggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    | || ||| |||||  ||| | |||||||||||| ||||||||||||||||| || |||||||||||||    
T  46127501 atgggttcaggtattcccgccccatccccgtccccgcattgaataattttttgtaataaaaaatagaag 46127433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 44986366 - 44986172
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||| ||||||||| || ||| |||| || | |||||| ||| |||||||| ||||||||||| |||||| ||  ||||||||||   |||||||| | |    
T  44986366 taggtatgacaatggggcgggatggggacgagttttaccttccccgtccccatacccgattctcatatacttacctgttaccctacctatatccaacg-a 44986268  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| ||||||||||||| |||||| |||||||||| ||  | ||||||| |||| | || |||||||||||| ||  ||||||||    
T  44986267 gatgagaaattgaagctcatctccgtccccgacgggttcgggtatccccaccccatccccatccccgtatcgaataattttttttaacaaaaaata 44986172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 326
Target Start/End: Complemental strand, 18125645 - 18125515
Alignment:
Q  196 tacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    ||||||||||| |||||| ||   |||| ||||| |||||| || || |||||||||| ||| |||||| |||||| |||||| |||||||||| ||| |    
T  18125645 tacccgattctcatatacttactcgttatcctatccatatctaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccgcc 18125546  T
Q  296 tcatccccgtccctgcattgaataatttttt 326  Q
     |||||||||||| |||||||||||||||||    
T  18125545 ccatccccgtccccgcattgaataatttttt 18125515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 5376710 - 5376908
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    ||||||||| |||||||||||||||| |   | |||| |||  |||| ||| ||||||||| | |||||| ||   |||||||||||||||| ||| ||     
T  5376710 taggcatgataatgaggtggggtggggatggactttagatttcccgttcccatacccgattatcatatacttacccgttaccctattcatattcaacggg 5376809  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||||| |||| |||||| |||||| |||| ||||| |||   ||||||  |||| ||||||||||||| ||| || |||||||||||||    
T  5376810 gatgagaaattgaaccgcatccccgtccccgacgggttcgagtatccccgctccatccctctccccgcattgaataattcttt-taataaaaaatagaag 5376908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 17851489 - 17851640
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| |||| |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| ||     
T  17851489 taggcatggcaatggggcggggtggggacaagttttaccttccccgtccccatacccgattctcatatacttacccgttaccctacccatacccaacggg 17851588  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    |||||||||| ||| |||||| | |||| |||||| |||||||||| |||||    
T  17851589 gatgagaaattgaatctcatccctgtcctcgacgggttcgggtatccccgtc 17851640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 339
Target Start/End: Original strand, 35074144 - 35074286
Alignment:
Q  196 tacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    ||||||||||| |||||| ||   |||||||||  |||| |||| || |||||||||||||| | |||| |||||| |||||| |||||||||| ||| |    
T  35074144 tacccgattctcatatacttacccgttaccctacccatacccaacggggatgagaaatcgaatcccatccccgtccccgacgggttcgggtatccccgcc 35074243  T
Q  296 tcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
     ||||| |||||| ||||||||||||||||| || |||||||||    
T  35074244 ccatcctcgtccccgcattgaataatttttt-taataaaaaata 35074286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 190 - 343
Target Start/End: Original strand, 16865839 - 16865991
Alignment:
Q  190 tccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    ||||| ||||||||| | |||||| ||   |||||||||  |||| |||| || |||||||||| ||| | |||| |||||| |||||| ||||||||||    
T  16865839 tccccatacccgattatcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatc 16865938  T
Q  290 tccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
     ||  | |||||||||||| ||||||||||||||||| || |||||||||||||    
T  16865939 cccaccccatccccgtccccgcattgaataatttttt-taataaaaaatagaag 16865991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 343
Target Start/End: Original strand, 38152523 - 38152724
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||||||||| || |||||||| ||   |||||| ||| |||| ||| ||| ||||||| |||||| ||   |||||||||  ||||  ||| ||    
T  38152523 ataggcatgacaatggggcggggtggggacgggttttaccttccccgttcccatactcgattctcatatacttacccgttaccctacccatactcaacgg 38152622  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaata-attttttatattaaaaaataga 341  Q
     |||||||||| ||| | |||| |||||| ||| || || ||||||| ||| | |||||||||||| |||||||||| ||||||| || |||||||||||    
T  38152623 ggatgagaaattgaatcccatccccgtccccgatgggtttgggtatccccgccccatccccgtcccggcattgaatatattttttttaataaaaaataga 38152722  T
Q  342 ag 343  Q
    ||    
T  38152723 ag 38152724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 336
Target Start/End: Complemental strand, 27850760 - 27850601
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||||||| ||||| || ||||| ||||| ||| || ||   |||||| ||| |||| |||| || |||||||||| ||||| |||| |||||| | |    
T  27850760 ttttacattccccgtctccatacccaattctcatacacttacccgttacc-tatccatacccaacggggatgagaaattgaaccccatccccgtccccaa 27850662  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaa 336  Q
    ||| || ||||||||||| | |||||||||||| ||||||||||||||||| || ||||||    
T  27850661 cgggtttgggtatctccgccccatccccgtccccgcattgaataattttttttaataaaaa 27850601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 343
Target Start/End: Complemental strand, 41741831 - 41741720
Alignment:
Q  231 catatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatat 330  Q
    |||||||||  | |||||||||| ||| ||||||  ||||| ||||||||||||||||| ||| ||||||||| |||| |||| |||||||||||| ||     
T  41741831 catatccaacagggatgagaaattgaatctcatcatcgtccccgacggattcgggtatccccgcctcatccccatccccgcatcgaataatttttt-taa 41741733  T
Q  331 taaaaaatagaag 343  Q
    |||||||||||||    
T  41741732 taaaaaatagaag 41741720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 339
Target Start/End: Original strand, 21702303 - 21702497
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| || ||||| ||||||||||| |||||| ||   | |||||||  ||||  ||| ||     
T  21702303 taggcatggcaatggggaggggtggggacgggttttaccttccccatccccatacccgattctcatatacttacccgctaccctacccatactcaacggg 21702402  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| |  ||| |||||| |||||| |||||||||| ||| | |||||||||||| ||||||||||||||||| || |||||||||    
T  21702403 gatgagaaattgaatcctatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaataatttttt-taataaaaaata 21702497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 343
Target Start/End: Original strand, 17885146 - 17885269
Alignment:
Q  220 gttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaata 319  Q
    |||||||||  |||| |||| || |||||||||| ||| |||||| |||||| |||||| || ||||||| ||  ||||||||| |||| | || |||||    
T  17885146 gttaccctacccatacccaacggggatgagaaattgaatctcatccccgtccccgacgggtttgggtatccccacctcatccccatccccgtatcgaata 17885245  T
Q  320 attttttatattaaaaaatagaag 343  Q
    ||||||| || |||||||||||||    
T  17885246 attttttttaataaaaaatagaag 17885269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 25783365 - 25783248
Alignment:
Q  148 catgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatg 247  Q
    |||||||||| || |||||||| || |||||||||||| | |||||| |||| |||||| |||||| || |||||||||||  ||||| |||||| ||||    
T  25783365 catgacaatggggcggggtggg-acgaattttacattccctgtccccatacctgattctcatatacttacatgttaccctacccatattcaatggggatg 25783267  T
Q  248 agaaatcgaacctcatctc 266  Q
    |||||| |||  |||||||    
T  25783266 agaaattgaatttcatctc 25783248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 24752657 - 24752854
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| ||||||||| | ||   |||||| |||||| | | | || |||||||| |||||| |||  |||| ||||  ||||| ||| |||    
T  24752657 taggcatgacaatggggtggggtgaggacgggttttaccttctccattctcatatccgattctcatatacttatccgttatcctacccatattcaacgga 24752756  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| | ||||||| ||| |||||| ||| |||||| | | | |||||| ||||| ||||| ||||  ||||| || |||||||||||||    
T  24752757 gatgagaaattgaatcacatctccatccccgacgggttcaggtatccctgccccatccctgtccccgcattaaata--tttttttaataaaaaatagaag 24752854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 31393823 - 31393751
Alignment:
Q  219 tgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctc 291  Q
    |||||||||| |||||||||| ||||||||||||| ||| |||||| |||||  |||||||||||| ||||||    
T  31393823 tgttaccctactcatatccaacggagatgagaaattgaatctcatccccgtctccgacggattcggatatctc 31393751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 10072112 - 10072310
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| || ||||| ||||||||||| |||||| ||  ||||||||||  |||| ||||  |     
T  10072112 taggcatggcaatggggcggggtgggaacgggttttaccttccccatccccatacccgattctcatatacttacctgttaccctacccatacccaacagg 10072211  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| ||||||  ||||| |||||| |||||||||| ||  | ||||||  |||| | || |||||||||||| |  |||||||||||||    
T  10072212 gatgagaaattgaatctcatcctcgtccccgacgggttcgggtatccccaccccatccctatccccgtatcgaataatttttt-tgataaaaaatagaag 10072310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 343
Target Start/End: Original strand, 17884932 - 17885055
Alignment:
Q  220 gttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaata 319  Q
    |||||||||  ||||| ||| || |||||||||| ||| |||||| |||||| |||||| || ||||||| ||  ||||||| | |||| | || |||||    
T  17884932 gttaccctacccatattcaacggggatgagaaattgaatctcatccccgtccccgacgggtttgggtatccccacctcatcctcatccccgtatcgaata 17885031  T
Q  320 attttttatattaaaaaatagaag 343  Q
    ||||||| || |||||||||||||    
T  17885032 attttttttaataaaaaatagaag 17885055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 25905352 - 25905446
Alignment:
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| |||||| |||||| ||||||||||||||||| ||  | |||||||||||  ||||||||| ||||||| || |||||||||    
T  25905352 gatgagaaattgaatctcatccccgtccccgacggattcgggtatcccctccccatccccgtcctcgcattgaat-attttttttaataaaaaata 25905446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 308
Target Start/End: Complemental strand, 25980392 - 25980229
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| ||||||||||| |    |||||| ||| ||||||||  |||||||||| |||||| ||   |||||||||  |||| |||| ||     
T  25980392 taggcatggcaatggggtggggtggggatgggttttaccttc-ccgtccccaaacccgattctcatatacttacccgttaccctacccatacccaacggg 25980294  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccc 308  Q
    ||| |||||| ||| ||||||||||||| | |||| |||||||||| ||| | ||||||| ||||    
T  25980293 gataagaaattgaatctcatctccgtcctcaacgggttcgggtatccccgccccatccccatccc 25980229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 327
Target Start/End: Complemental strand, 44794420 - 44794312
Alignment:
Q  219 tgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaat 318  Q
    ||||||||||  |||||| ||  | |||||||||||||| |||||| |||||  ||| || ||| ||| || ||| | ||||||||||||||||||||||    
T  44794420 tgttaccctacccatatctaacagggatgagaaatcgaatctcatccccgtctccgaagggttcaggtgtccccgccccatccccgtccctgcattgaat 44794321  T
Q  319 aatttttta 327  Q
    | |||||||    
T  44794320 attttttta 44794312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 343
Target Start/End: Complemental strand, 26004938 - 26004792
Alignment:
Q  196 tacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    ||||||||||| |||||| ||  | ||||| || ||||| | ||||| |||||||| | ||||| |||| |||||| |||||||||||||||||  || |    
T  26004938 tacccgattcttatatacttacctcttaccatactcatacctaatggggatgagaatttgaaccacatccccgtccccgacggattcgggtatccacgcc 26004839  T
Q  296 tcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
     || |||  ||||| ||||||||  |||||| || |||||||||||||    
T  26004838 ccagccctctccctacattgaat-tttttttttaataaaaaatagaag 26004792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 37196381 - 37196306
Alignment:
Q  220 gttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    |||||||||  |||| |||| || |||||||||| ||| ||||||||||||| |||||| |||||||||| |||||    
T  37196381 gttaccctacccatacccaacggggatgagaaattgaatctcatctccgtcctcgacgggttcgggtatccccgtc 37196306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 43217959 - 43218078
Alignment:
Q  219 tgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaat 318  Q
    ||||||||||  |||||| || ||||||||||||| ||| ||||||||||||| | | || |||||||||  ||| |||||||||| ||  ||| |||||    
T  43217959 tgttaccctacccatatctaacggagatgagaaattgaatctcatctccgtccccaatgggttcgggtattcccgcctcatccccgcccacgcagtgaat 43218058  T
Q  319 -aattttttatattaaaaaa 337  Q
     |||||||| || |||||||    
T  43218059 caattttttttaataaaaaa 43218078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 325
Target Start/End: Original strand, 41103299 - 41103449
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| |||||||||||| ||||||||||| |||| | ||   |||||||||   ||| |||| || |||||||||| ||| |||||  |||||| |||    
T  41103299 ttttaccttctccgtccccatacccgattctcatatgcttacccgttaccctacctatacccaacggggatgagaaattgaatctcattcccgtccccga 41103398  T
Q  276 cggattcgggtatctccgtctca-tccccgtccctgcattgaataattttt 325  Q
     || || ||||||| ||  | || |||||||||| ||||||||||||||||    
T  41103399 tgggtttgggtatccccaccccattccccgtccccgcattgaataattttt 41103449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 8906980 - 8906939
Alignment:
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcggg 285  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  8906980 gatgagaaatcgaacctcatctccgtccccgacgggttcggg 8906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 23475691 - 23475607
Alignment:
Q  245 atgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttata 329  Q
    ||||||||||||| |||||| |||||   ||||| |||||||||| ||| ||||||| | |||| ||| |||||| |||||||||    
T  23475691 atgagaaatcgaatctcatccccgtctctgacgggttcgggtatccccgcctcatcctcatccccgcagtgaatatttttttata 23475607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 44845594 - 44845494
Alignment:
Q  208 atatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtcc 307  Q
    |||||| || |||||||||||  ||||||||| ||||||||||||| ||| | |||| || ||| | | |||||| ||||| |||| |||||| ||||||    
T  44845594 atatacttacatgttaccctaaccatatccaacggagatgagaaattgaatcgcatccccatcctcaatggattcaggtatttccgcctcatctccgtcc 44845495  T
Q  308 c 308  Q
    |    
T  44845494 c 44845494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 33840730 - 33840845
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| |||||| ||||| | ||  ||||| |||||| ||  ||||||||||  ||||  ||| || ||||||||||||||||||||| ||||   |||    
T  33840730 ttttaccttctccatccccatgccatattctcatatacttacctgttaccctacccatactcaacggggatgagaaatcgaacctcatccccgtttccga 33840829  T
Q  276 cggattcgggtatctc 291  Q
    |||||||||| |||||    
T  33840830 cggattcgggaatctc 33840845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 43507089 - 43507255
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||| ||| ||||||||||| |||||| ||  ||||||||||  ||||  ||| || ||||| |||| ||| |||||| |||||| |||    
T  43507089 ttttaccttccccgttcccatacccgattctcatatacttacctgttaccctacccatactcaacgg-gatgacaaattgaatctcatccccgtccccga 43507187  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    | | |||||||||| ||    ||||||| ||||   || |||||||||||| || |||||||||||||    
T  43507188 caggttcgggtatccccactccatccccatccccatatcgaataattttttttaataaaaaatagaag 43507255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 278
Target Start/End: Complemental strand, 10996316 - 10996182
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| || ||||| ||||| ||||| |||||| ||  |||||| |||  ||||| ||| ||     
T  10996316 taggcatggcaatggggcggggtggggacgggttttaccttccccatccccataccctattctcatatacttacctgttactctacccatattcaacggg 10996217  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacgg 278  Q
    ||||||||||||||| ||||| | |||| ||||||    
T  10996216 gatgagaaatcgaacatcatccctgtccccgacgg 10996182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 343
Target Start/End: Complemental strand, 44734823 - 44734629
Alignment:
Q  149 atgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatga 248  Q
    ||||||||| || |||||||  ||  ||||||  ||| ||||| || || |||||||| |||||| |||  |||| ||||  |||| |||| |  |||||    
T  44734823 atgacaatggggcggggtggtgacggattttatcttccccgtctccatatccgattctcatatacttatccgttatcctacccatacccaacgaggatga 44734724  T
Q  249 gaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||| ||| | ||||||||||  |||||| ||| |||||| |||   ||||||| |||  | || |||||||||||| || |||||||||||||    
T  44734723 gaaattgaatcccatctccgtctccgacgggttcaggtatccccgctccatccccatcctcgtatcgaataattttttttaataaaaaatagaag 44734629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 326
Target Start/End: Complemental strand, 5432416 - 5432323
Alignment:
Q  233 tatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    ||||||| || |||||||||||||| |||||| || ||| | |||| ||| |  |||||||| |||| ||| |||| ||| |||||||||||||    
T  5432416 tatccaacggggatgagaaatcgaatctcatccccatccccaacgggttcagacatctccgtttcatacccatccccgcagtgaataatttttt 5432323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 12980098 - 12980191
Alignment:
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaa 337  Q
    |||||||||| |||||||||| | |||  |||||| |||||||||| ||| |  |||| | |||| ||||||||||||||| | || |||||||    
T  12980098 gatgagaaattgaacctcatccctgtcaccgacgggttcgggtatccccgcccaatcctcatccccgcattgaataattttatttaataaaaaa 12980191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 23534057 - 23533988
Alignment:
Q  220 gttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    |||||||||  ||||||||  || |||||||||||||| |||||| |||||  |||||| ||||||||||    
T  23534057 gttaccctacccatatccagcggggatgagaaatcgaatctcatccccgtctccgacgggttcgggtatc 23533988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 291
Target Start/End: Original strand, 42005564 - 42005672
Alignment:
Q  183 ttctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattc 282  Q
    |||||| ||||| |||| |||||| |||||  ||   ||||| |||| ||||||||| || |||||||||||||||| |||| | |||  |||||| |||    
T  42005564 ttctccatccccatacctgattctcatatatttacccgttactctatccatatccaacggcgatgagaaatcgaaccccatccctgtctccgacgggttc 42005663  T
Q  283 gggtatctc 291  Q
    ||| |||||    
T  42005664 ggggatctc 42005672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 2366945 - 2367143
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| |||  | ||||| || |||||||| |||||| || ||||||||||| ||||| |||| ||     
T  2366945 taggcatggcaatggggcggggtggggacgggttttaccttcctcatccccatatccgattctcatatacttacatgttaccctactcatacccaacggg 2367044  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| |||||| |||||| |||||||||| ||| | |||||||||||| |||||||||||||||||| | |||||||||||||    
T  2367045 gatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaataatttttta-aataaaaaatagaag 2367143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 327
Target Start/End: Complemental strand, 10188543 - 10188360
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| || | |||||| ||| || ||||| ||||||||||| |||||| ||  ||||||||||  |||| |||| ||     
T  10188543 taggcatggcaatggggcggggtggggacgagttttaccttccccatccccatacccgattctcatatacttacctgttaccctacccatacccaacggg 10188444  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttta 327  Q
    |||||||||| ||| | |||| |||||| |||||  |||||||||| ||| | |||||||||||| |||||||||| |||||||    
T  10188443 gatgagaaattgaatcccatccccgtccccgacgagttcgggtatccccgccccatccccgtccccgcattgaatattttttta 10188360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 11762097 - 11762263
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||||||| ||||  || ||| ||||||| |||||| ||  |||||||||| |||||||||| || | |||||||| |||||||||| || ||| |||    
T  11762097 ttttacattccccgtttccatacacgattcttatatacttacctgttaccctactcatatccaacgggggtgagaaattgaacctcatcgccatccccga 11762196  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| ||||||||| |||| | ||||||| |||| ||||||||| ||||||| || |||||||||||||    
T  11762197 cgggttcgggtatttccgccccatccccatccc-gcattgaatgattttttttaataaaaaatagaag 11762263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 339
Target Start/End: Original strand, 14254631 - 14254773
Alignment:
Q  196 tacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    ||||||||||| |||||| || ||||||||||| ||||||| ||    |||||||||| ||| |||||| |||||| |||||| |||||||||| | | |    
T  14254631 tacccgattctcatatacttacatgttaccctactcatatcgaacatggatgagaaattgaatctcatccccgtccccgacgggttcgggtatccctgcc 14254730  T
Q  296 tcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    ||||||||||| ||||||||||||||||||| || |||||||||    
T  14254731 tcatccccgtctctgcattgaataatttttt-taataaaaaata 14254773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 3484392 - 3484198
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||  ||||||||||| |||||| ||   |||||||||  |||| |||| ||     
T  3484392 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccctatacccgattctcatatacttacccgttaccctacccatacccaacggg 3484293  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| ||| | |||||||||||| |||||||| |||||||| || |||||||||    
T  3484292 gatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaacaatttttt-taataaaaaata 3484198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 32853495 - 32853661
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| || ||||| ||||||||| | |||||| ||   |||||||||  |||| |||| || |||||||||| ||| |||||| || ||| |||    
T  32853495 ttttaccttccccatccccatacccgattatcatatacttaccagttaccctacccatacccaacggggatgagaaattgaatctcatccccatccccga 32853594  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| ||| | |||||||||||| ||||||||||||||||| || |||||||||||||    
T  32853595 cgggttcgggtatccccgccccatccccgtccccgcattgaataatttttt-taataaaaaatagaag 32853661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 32052707 - 32052874
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||| | ||||||||||| |||||| ||   |||||||||  ||||||||| || |||||||||| ||| |||||| |||||  | |    
T  32052707 ttttaccttccccgtcctcatacccgattctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtctccaa 32052806  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| ||| |||||| ||| ||||||||||||||  |||||||||||||||| |   ||||||||||||    
T  32052807 cgggttccggtatccccgcctcatccccgtccccacattgaataatttttttttaaaaaaaatagaag 32052874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 24225320 - 24225516
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  ||||||||| ||     
T  24225320 taggcatggcaatggggcggggtggggacgggttttaccttc-ccgtccccatacccgattctcatatacttactcgttaccctacccatatccaacggt 24225418  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| | |||| |||||  |||||| |||||||||| ||| | ||||| |||| | ||||||||||  ||||| || |||||||||||||    
T  24225419 gatgagaaattgaatcacatcgccgtctccgacgggttcgggtatccccgccccatcctcgtctccgcattgaata--tttttttaataaaaaatagaag 24225516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 12309300 - 12309397
Alignment:
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||  | |||| ||| ||||||||||||| ||| |||||||||||||| ||||||||||||||||  || |||||||||||||    
T  12309300 gatgagaaattgaatctcattccggtcctcgatggattcgggtatccccgcctcatccccgtccccgcattgaataattttt--taataaaaaatagaag 12309397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 12141016 - 12141167
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| || | |||||| ||| |||||||| ||||||||||| |||||| ||   ||||| |||  |||| |||| ||     
T  12141016 taggcatggcaatggggcggggtggggacgagttttaccttccccgtccccatacccgattctcatatacttacccgttactctacccatacccaacggg 12141115  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    |||||||||| ||| |||||| |||||| |||||| || ||||||| |||||    
T  12141116 gatgagaaattgaatctcatcgccgtccccgacgggtttgggtatccccgtc 12141167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 14244923 - 14245061
Alignment:
Q  200 cgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcat 299  Q
    ||||||| |||||| || ||||||||||| | ||||| ||| | ||||||||||  ||  ||||| |||||| ||| || |||||||||| ||| |||||    
T  14244923 cgattctcatatacttacatgttaccctacttatatcgaatagtgatgagaaattaaatttcatccccgtccccgatgggttcgggtatccccgcctcat 14245022  T
Q  300 ccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    | || || ||||||||||||||||||| || |||||||||    
T  14245023 ctccatctctgcattgaataatttttt-taataaaaaata 14245061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 27534314 - 27534465
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| ||     
T  27534314 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttaaccgttaccctacccatacccaacggg 27534413  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| |||||    
T  27534414 gatgagaaattgaatcacatccccgtccccgacgggttcgggtatccccgtc 27534465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 14505750 - 14505859
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    ||||||||||  ||||||| ||||||||||| |||||| ||   |||||||||  ||||||||| || |||||||||| ||||| |||| |||||| |||    
T  14505750 ttttacattcctcgtccccatacccgattctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaaccccatccccgtccccga 14505849  T
Q  276 cggattcggg 285  Q
    ||| ||||||    
T  14505850 cgggttcggg 14505859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 338
Target Start/End: Complemental strand, 12678534 - 12678369
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatat--gttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccac 273  Q
    ||||||||||  ||| ||| ||||||||||| |||||  | |||  |||||| ||  ||||||||| || ||||||||||  |||| ||||| | ||| |    
T  12678534 ttttacattcctcgtgcccatacccgattctaatatatttttatctgttaccatacacatatccaacggggatgagaaatttaaccacatcttcttcctc 12678435  T
Q  274 gacggattcgggtatctccgtctcatccccgtccctgcattgaata-attttttatattaaaaaat 338  Q
    | ||| |||||||||| | | ||||||||| ||||||||||||||| ||||||| || ||||||||    
T  12678434 ggcgggttcgggtatccctgcctcatccccatccctgcattgaatatattttttttaataaaaaat 12678369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 288
Target Start/End: Original strand, 9442267 - 9442412
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||||||||| |  |||||||| ||   |||||| ||| ||||| || ||||||||||| |||||| ||   |||||| ||  ||||||||| ||    
T  9442267 ataggcatgacaatgggacggggtggggacgggttttaccttccccgtctccatacccgattctcatatacttacccgttaccttacccatatccaacgg 9442366  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggtat 288  Q
     |||||||||| ||| |||||  |||||| |||||| |||||||||    
T  9442367 ggatgagaaattgaatctcattcccgtcctcgacgggttcgggtat 9442412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 144 - 341
Target Start/End: Complemental strand, 33862659 - 33862455
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctatt-------catatc 236  Q
    ||||||||||||||||| |||||||| ||   |||||||||| |||||||| ||||||||||| |||||||||   |||||||||         |||||     
T  33862659 taggcatgacaatgaggcggggtggggacgggttttacattccccgtccccatacccgattctcatatacatactcgttaccctaccgcctacccatatt 33862560  T
Q  237 caatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaa 336  Q
    ||| || |||||||||| |||||||||| |||||| |||||| |||||||||| ||| | |||||||||||| |||||||||||||||||  || |||||    
T  33862559 caacggggatgagaaattgaacctcatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaataatttttttaatgaaaaa 33862460  T
Q  337 ataga 341  Q
    |||||    
T  33862459 ataga 33862455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 196 - 343
Target Start/End: Complemental strand, 6093523 - 6093377
Alignment:
Q  196 tacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    ||||||||||| |||||| ||  ||||||||||  ||||||||| || |||||||||| ||| |  ||| |||||| |||||| ||||| |||| ||| |    
T  6093523 tacccgattctcatatacttacttgttaccctacccatatccaacggggatgagaaattgaatcctatccccgtccccgacgggttcggatatccccgcc 6093424  T
Q  296 tcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  6093423 tcatccccgtccccgcattgaataatttttt-tattaaaaaatagaag 6093377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 148 - 326
Target Start/End: Complemental strand, 38006936 - 38006758
Alignment:
Q  148 catgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatg 247  Q
    |||| ||||| ||||||||||| ||   |||||||||| |||| ||| ||||||||||| |||||| |||  |||||||||  |||| |||| || ||||    
T  38006936 catggcaatggggtggggtggggacgggttttacattccccgttcccatacccgattcttatatacttatccgttaccctacccatacccaacggggatg 38006837  T
Q  248 agaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    |||||| ||||| |||  |||||| ||| || || ||||||| ||| | |||||||||||| |||||||||||||||||    
T  38006836 agaaattgaaccccatacccgtccccgatgggtttgggtatccccgccccatccccgtccccgcattgaataatttttt 38006758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 40517458 - 40517623
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||  ||||||||||  |||| |||| || |||||||||| ||| |||||| |||||| ||     
T  40517458 ttttaccttccccgtccccatacccgattctcatatacttacctgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtccccgg 40517557  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| ||| | |||||| ||||| ||||||||||  ||||| || |||||||||||||    
T  40517558 cgggttcgggtatccccgccccatccctgtccccgcattgaata--tttttttaataaaaaatagaag 40517623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 30996217 - 30996414
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| |||||||||| | ||||||||||| |||||  ||  ||||||| ||   |||| ||| ||     
T  30996217 taggcatggcaatggggcggggtggggacgggttttaccttctccgtcctcatacccgattctcatatatttacctgttaccttacctatattcaacgg- 30996315  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| |||||| ||||||||||||||||| | | | |||| ||||||| ||||||||||||||||| || |||||||||||||    
T  30996316 gatgagaaattgaatctcatccccgtccccgacggattcgggtatccctgccccatctccgtccccgcattgaataatttttt-taataaaaaatagaag 30996414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 337
Target Start/End: Complemental strand, 20973923 - 20973762
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| || | |||||| |||||| ||  ||||||||||  ||||||||| || |||||||||| ||| |||||| |||| | |||    
T  20973923 ttttaccttccccgtccccataactgattcttatatacttacctgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtacccga 20973824  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaa 337  Q
    ||| |||||||||| | | | |||||||||||| ||||||||||||| ||| || |||||||    
T  20973823 cgggttcgggtatccctgccccatccccgtccccgcattgaataattgtttttaataaaaaa 20973762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 22695371 - 22695173
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||| ||||||||| || |||||||| ||   |||||| ||| |||||||  ||||| ||||| |||||| ||   |||||||||  |||| |||||||     
T  22695371 taggaatgacaatggggcggggtggggacgggttttaccttccccgtccctatacccaattctcatatacttactcgttaccctacccatacccaatggg 22695272  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| | |||| ||||   |||||| |||||||||| ||| | |||||||||||  ||||||||||||||||| || |||||||||||||    
T  22695271 gatgagaaattgaatcccatccccgtttccgacgggttcgggtatccccgccccatccccgtcctcgcattgaataatttttt-taataaaaaatagaag 22695173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 339
Target Start/End: Complemental strand, 27088790 - 27088626
Alignment:
Q  175 attttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacg 274  Q
    ||||||||||| || ||| | ||||||||| | |||||  ||   |||||||||  ||||||||| || |||| ||||| |||||||||| |||||| ||    
T  27088790 attttacattccccttcctcatacccgattttaatatatttacccgttaccctacccatatccaacggggatgggaaattgaacctcatccccgtccccg 27088691  T
Q  275 acggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    || |||| ||||||| ||| | ||||| | |||| ||||||||||||||||| || |||||||||    
T  27088690 actgatttgggtatccccgccccatcctcatccccgcattgaataattttttttaataaaaaata 27088626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 144 - 269
Target Start/End: Complemental strand, 2413189 - 2413063
Alignment:
Q  144 taggcatgacaatgaggtgg-ggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    |||||||||||||| || || |||||| || | ||||||||||||||||| | || |||||||| |||||| ||| ||||||||||  ||||||||| ||    
T  2413189 taggcatgacaatggggcggaggtggggacgagttttacattctccgtcctcatatccgattcttatatacttatctgttaccctacccatatccaacgg 2413090  T
Q  243 agatgagaaatcgaacctcatctccgt 269  Q
      ||||||||| |||| ||||||||||    
T  2413089 gaatgagaaattgaacttcatctccgt 2413063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 6369313 - 6369511
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    ||||||||| |||| || |||||||| || |  ||||| || ||||| | | ||| ||||||| |||||| ||   |||||||||  ||||||||| ||     
T  6369313 taggcatgataatggggcggggtggggacgagctttaccttttccgttctcatactcgattctcatatacttacccgttaccctacccatatccaacgg- 6369411  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||||||||  || |||||| |||| |  || || |||||||||| ||| ||||||||| |||| ||||| ||||||||||| || |||||||||||||    
T  6369412 gatgagaaattaaatctcatccccgttcctgatgggttcgggtatccccgcctcatccccatccccgcattaaataattttttttaataaaaaatagaag 6369511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 341
Target Start/End: Original strand, 3572843 - 3573040
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| |||| |||||| |  | ||||||||| ||||||||| |||| |||||| |||||| ||| |||||| |||   |||  ||| |||    
T  3572843 taggcatgacaatggggtgaggtggggatgagttttacattttccgtccccatacctgattctcatatacttatctgttactctacctatactcaacgga 3572942  T
Q  244 gat-gagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaataga 341  Q
    ||| ||||||| |||| |||||   || | |||||| ||| |||||| ||||| ||||| |||| | ||||||||||||| ||| || |||||||||||    
T  3572943 gatagagaaattgaacatcatccatgttctcgacgggttcaggtatccccgtcccatcctcgtcgccgcattgaataattgttt-taataaaaaataga 3573040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 17853717 - 17853605
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||  ||||||||||  |||| |||| || |||||||||| ||| |||||| |||||| |||    
T  17853717 ttttaccttccccgtccccatacccgattctcatatacttacctgttaccctacccatacccaacgg-gatgagaaattgaatctcatccccgtccccga 17853619  T
Q  276 cggattcgggtatc 289  Q
    ||| ||||||||||    
T  17853618 cgggttcgggtatc 17853605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 5909120 - 5908964
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  | || |||| || |||||||||| ||| |||||| |||||| |||    
T  5909120 ttttaccttccccgtccccatacccgattctcatatacttacccgttaccctacccgtacccaacggggatgagaaattgaatctcatccccgtccccga 5909021  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    ||| |||||||||| ||      ||||| |||| ||||||||||||||||| || |||||||||    
T  5909020 cgggttcgggtatcccc------tccccatccccgcattgaataatttttt-taataaaaaata 5908964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 12447033 - 12447200
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||||||| |||||||| || | |||||  |||||| ||   |||||| ||  |||| |||| || |||||||||  ||||| |||| |||||| |||    
T  12447033 ttttacattccccgtccccatatctgattcacatatacttacccgttaccttacccatacccaacggggatgagaaaatgaaccccatccccgtcctcga 12447132  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
     || |||  ||||| ||| | |||||||||||| ||||||||||||||| | || |||||||||||||    
T  12447133 tgggttcaagtatccccgccccatccccgtccccgcattgaataattttatttaataaaaaatagaag 12447200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 325
Target Start/End: Complemental strand, 42987913 - 42987766
Alignment:
Q  178 ttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacg 277  Q
    |||| ||| |||||||| |||||||||||  ||||| ||   ||||| ||| |||||||||| ||  ||||||||| ||| |||||| |||| | |||||    
T  42987913 ttaccttccccgtccccatacccgattctcgtatacttacccgttacgctactcatatccaacgggaatgagaaattgaatctcatccccgttcccgacg 42987814  T
Q  278 gattcgggtatctccgtctcatccccgtccctgcattgaataattttt 325  Q
    | ||||||||||  || | ||||| |||||| |||||||||| |||||    
T  42987813 ggttcgggtatcctcgccccatcctcgtccccgcattgaatatttttt 42987766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 343
Target Start/End: Complemental strand, 12834990 - 12834847
Alignment:
Q  200 cgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcat 299  Q
    ||||||| |||||| |||  |||| ||||| |||| |||| |  |||||||||| ||| ||||||||||||| ||| || |||||||||| ||| | |||    
T  12834990 cgattctcatatacttatccgttatcctatccatacccaacgtggatgagaaattgaatctcatctccgtccccgatgggttcgggtatccccgccccat 12834891  T
Q  300 ccccgtccctgcattgaataa-ttttttatattaaaaaatagaag 343  Q
     ||| |||| |||| |||||| |||||| || |||||||||||||    
T  12834890 -cccatccccgcatcgaataatttttttttaataaaaaatagaag 12834847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 1218438 - 1218533
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtcc 271  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||   |||||| || ||||| |||| || |||||||||| ||| |||||||||||||    
T  1218438 ttttaccttccccgtccccatacccgattctcatatacttacccgttaccttactcatacccaacggggatgagaaattgaatctcatctccgtcc 1218533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 343
Target Start/End: Complemental strand, 12866966 - 12866824
Alignment:
Q  200 cgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcat 299  Q
    ||||||| |||||| |||  |||| ||||| |||| |||| |  |||||||||| ||| |||||||| |||| ||| || ||||| |||| ||| | |||    
T  12866966 cgattctcatatacttatccgttatcctatccatacccaacgtggatgagaaattgaatctcatctctgtccccgatgggttcggatatccccgccccat 12866867  T
Q  300 ccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||  |||| |||| |||||||||||| || |||||||||||||    
T  12866866 ccca-tccccgcatcgaataattttttttaataaaaaatagaag 12866824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 343
Target Start/End: Complemental strand, 3565186 - 3564997
Alignment:
Q  146 ggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggaga 245  Q
    |||||| ||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  ||||||||| || ||    
T  3565186 ggcatggcaatggggcggggtggggacgggttttaccttc-ccgtccccatacccgattctcatatacttacccgttaccctacccatatccaacgggga 3565088  T
Q  246 tgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||| ||| ||||      ||| |||||| ||||| |||| ||  ||||||||| |||| | || |||||||||||| || |||||||||||||    
T  3565087 tgagaaattgaatctca------tccccgacgggttcggatatccccacctcatccccatccccgtatcgaataatttttt-taataaaaaatagaag 3564997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 343
Target Start/End: Complemental strand, 13402452 - 13402274
Alignment:
Q  165 gtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatc 264  Q
    ||||| ||| ||||||| ||  |||||||| || | |||||| |||||| ||   |||||||||   ||| |||| || |||||||||| ||| ||||||    
T  13402452 gtggggacagattttacctttcccgtccccatatctgattcttatatacttacccgttaccctacctatacccaacggggatgagaaattgaatctcatc 13402353  T
Q  265 tccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
     |||||| ||| || |||||||||| ||  |  |||||| |||| | || |||||||||||| || |||||||||||||    
T  13402352 cccgtccccgatgggttcgggtatccccaccctatccccatccccgtatcgaataattttttttaataaaaaatagaag 13402274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 289
Target Start/End: Original strand, 35311467 - 35311581
Alignment:
Q  175 attttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacg 274  Q
    ||||||| |||||| ||||| || |||||||| |||||| ||   |||| ||||   |||||||| || ||||| |||| ||| | ||||||| ||| ||    
T  35311467 attttaccttctccatccccatatccgattctcatatacttacccgttatcctacatatatccaacggggatgaaaaattgaatcccatctccatccccg 35311566  T
Q  275 acggattcgggtatc 289  Q
    |||||||||||||||    
T  35311567 acggattcgggtatc 35311581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 36579664 - 36579594
Alignment:
Q  201 gattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtcc 271  Q
    |||||| |||||| || |||||||||||  |||| |||| || |||||||||| ||| |||||||||||||    
T  36579664 gattctcatatacttacatgttaccctacccatacccaacggggatgagaaattgaatctcatctccgtcc 36579594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 35194304 - 35194260
Alignment:
Q  298 atccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||||    
T  35194304 atccccgtccccgcattgaata-ttttttataataaaaaatagaag 35194260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 339
Target Start/End: Original strand, 2984823 - 2984962
Alignment:
Q  199 ccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctca 298  Q
    |||||||| |||||| ||  |||||||||| |||||| ||| || |||||||||| ||| | ||||  ||||  |||| | || ||||||| ||| || |    
T  2984823 ccgattctaatatacttacctgttaccctactcatattcaacggggatgagaaattgaatcccatcctcgtctccgacaggtttgggtatccccgactaa 2984922  T
Q  299 tccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |  || |||| ||||||||||||||||| || |||||||||    
T  2984923 tttccatccccgcattgaataatttttt-taataaaaaata 2984962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 33420622 - 33420570
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttacccta 228  Q
    ||||||||||  ||||||| || |||||||| |||||| ||||||||||||||    
T  33420622 ttttacattccacgtccccatatccgattctaatatacttatatgttacccta 33420570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 42718020 - 42717902
Alignment:
Q  219 tgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaat 318  Q
    ||||||||||  ||||| ||| || ||||||||||  ||||||||| ||| |  |||||| || ||||||| ||||| ||||| | |||| |||||||||    
T  42718020 tgttaccctacccatattcaacggggatgagaaattaaacctcatccccgcctccgacgggtt-gggtatccccgtcacatcctcatccccgcattgaat 42717922  T
Q  319 aattttttatattaaaaaata 339  Q
    || ||||| || |||||||||    
T  42717921 aacttttt-taataaaaaata 42717902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 17468875 - 17469074
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||| | || | |||||||||| |||||||| ||||||||||| |||||| |||  |||||||||  ||||| ||| ||     
T  17468875 taggcatggcaatggggcggggtgaggacgagttttacattccccgtccccatacccgattctcatatacttatccgttaccctacccatattcaacggg 17468974  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||| |||| |||| |||||  | ||| |||||| |||||||||| | | | |||||||||||| ||||||||||||||||| || |||||||||||||    
T  17468975 gatgataaattgaacttcatcctcatccccgacgggttcgggtatccctgccccatccccgtccccgcattgaataattttttttaataaaaaatagaag 17469074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 34301623 - 34301425
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| || ||||| ||||||||| | |||||| ||  ||||||||||  |||| |||| ||     
T  34301623 taggcatggcaatggggcggggtggggacgggttttaccttccccatccccatacccgattatcatatacttacctgttaccctacccatacccaacggg 34301524  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| ||| | |||||||||||| ||||||||||||||||| || |||||||||||||    
T  34301523 gatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaataatttttt-taataaaaaatagaag 34301425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 339
Target Start/End: Original strand, 24927600 - 24927762
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| || |||||||||| ||| | |||| |||||| |||    
T  24927600 ttttaccttccccgtccccatacccgattctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccga 24927699  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    ||| |||||||||| | ||||||||| |||||| ||||||||||||||||| || |||||||||    
T  24927700 cgggttcgggtatccctgtctcatcctcgtccccgcattgaataatttttt-taataaaaaata 24927762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 196 - 343
Target Start/End: Original strand, 34776133 - 34776279
Alignment:
Q  196 tacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    ||||||||||| |||||  ||  ||||| ||||  ||||||||| || |||||||||| ||| |||||| |||||| | |||| ||||| |||| ||| |    
T  34776133 tacccgattctcatatatttacctgttaacctacccatatccaacggggatgagaaattgaatctcatccccgtccccaacgggttcggatatccccgcc 34776232  T
Q  296 tcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  34776233 tcatccccgtccccgcattgaataatttttt-tattaaaaaatagaag 34776279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 2076273 - 2076107
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| || |||||||||| ||| |||||| |||||| |||    
T  2076273 ttttaccttccccgtccccatacccgattctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtccccga 2076174  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| ||||| |||||||| | |||||||||| | |||||||| || ||||| || |||||||||||||    
T  2076173 cgggttcggttatctccgccccatccccgtctccgcattgaagaacttttt-taataaaaaatagaag 2076107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 11255474 - 11255275
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| ||||||||||| ||   |||||| ||| ||||| || |||   ||||| |||||| |||  |||||||||| ||||  ||| ||     
T  11255474 taggcatgacaatggggtggggtggggacgtgttttaccttccccgtctccatacataattctcatatacttatccgttaccctatccatactcaacggg 11255375  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| |||||| |||||| |||||||||| || || ||||||| |||  ||||  ||||||||||| || |||||||||||||    
T  11255374 gatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccatcccatccccatccacgcatcaaataattttttttaataaaaaatagaag 11255275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 343
Target Start/End: Complemental strand, 24870446 - 24870294
Alignment:
Q  190 tccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    ||||| ||||||||||| |||||| ||   |||||||||  |||| |||| || |||||||||| ||| |||||| |||||| ||| || || |||||||    
T  24870446 tccccatacccgattctcatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtcctcgatgggtttgggtatc 24870347  T
Q  290 tccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
     ||| ||||||| |||||| ||||||||||||||||| || |||||||||||||    
T  24870346 accgcctcatcctcgtccccgcattgaataatttttt-taataaaaaatagaag 24870294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 28977583 - 28977389
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||  ||| | |||||| ||||||||||| |||||| ||  ||||||||||  |||| |||| ||     
T  28977583 taggcatggcaatggggcggggtggggacgtgttttatcttccctgtccccatacccgattcttatatacttacctgttaccctacccatacccaacggg 28977484  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| | ||||  ||||| | |||| |||||||||| ||| | |||||||||||| ||||||||||||||||| || |||||||||    
T  28977483 gatgagaaattgaatcacatccacgtccccaacgggttcgggtatccccgccccatccccgtccccgcattgaataatttttt-taataaaaaata 28977389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 339
Target Start/End: Original strand, 32302679 - 32302873
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| |      
T  32302679 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttacccgttaccctacccatacccaacgag 32302778  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| | |||| |||| | |||||| |||||||||| ||| | |||||||||||| ||||||||||| ||||| || |||||||||    
T  32302779 gatgagaaattgaatcccatccccgttcccgacgggttcgggtatccccgccccatccccgtccccgcattgaataaattttt-tagtaaaaaata 32302873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 326
Target Start/End: Complemental strand, 4231188 - 4231006
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| ||||||||||| ||   |||||| |||||||||||| ||||||||||| |||||  |||  |||||||||  |||| |||| ||     
T  4231188 taggcatggcaatggggtggggtggggacgggttttaccttctccgtccccatacccgattctcatataattatccgttaccctacccatacccaacggg 4231089  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    ||| | |||| ||| |||||| || |||  ||||| |||||||||| ||| | |||||| ||| | |||||||||||||||||    
T  4231088 gataataaattgaatctcatccccatcccagacgggttcgggtatccccgccccatccctgtctccgcattgaataatttttt 4231006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 343
Target Start/End: Original strand, 24568603 - 24568756
Alignment:
Q  189 gtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtat 288  Q
    |||||| ||||||||||| | |||  |||  |||||||||  ||||||||| || |||||||||| ||||| |||| |||||| ||||||||| ||||||    
T  24568603 gtccccatacccgattctcacatatttatccgttaccctacccatatccaacggggatgagaaattgaaccccatccccgtccccgacggatttgggtat 24568702  T
Q  289 ctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    | | | |||||||| |||||  ||||||||||||||||  | |||||||||||||    
T  24568703 c-ctggctcatccctgtccccacattgaataatttttttaaataaaaaatagaag 24568756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 1012367 - 1012435
Alignment:
Q  275 acggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||| |||||||||| |||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  1012367 acgggttcgggtatccccgtctcatccccgtccccgcattgaataattttttttaataaaaaatagaag 1012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 324
Target Start/End: Original strand, 34139065 - 34139244
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    ||||||||||||| ||| |||||||| ||  |||||||||||| | ||||| |||  |||||| |||||| ||| ||||| ||||  ||||  ||| ||     
T  34139065 taggcatgacaattaggcggggtggggacggattttacattcttcatccccatacatgattctcatatacttatctgttatcctaaccatactcaacgg- 34139163  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttt 324  Q
    |||||||||| |||||||| | | |||| ||| || ||||| |||| ||| ||||||| |||||| |||||||||| ||||    
T  34139164 gatgagaaattgaacctcacccctgtccccgatgggttcggttatccccgcctcatccacgtccccgcattgaatattttt 34139244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 343
Target Start/End: Complemental strand, 39446027 - 39445838
Alignment:
Q  148 catgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatg 247  Q
    ||||| |||| || |||||||| || | |||||| |||||||||||| |||| |||||| |||||| ||   |||||||||  |||| | ||||  ||||    
T  39446027 catgataatggggcggggtggggacgagttttaccttctccgtccccatacctgattctcatatacttacccgttaccctacccatacctaatgaggatg 39445928  T
Q  248 agaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||| ||| |||||| |||||| |||||| |||||||||| ||  | |||||||||      || |||||||||||| || |||||||||||||    
T  39445927 agaaattgaatctcatccccgtccccgacgggttcgggtatccccaccccatccccgt------atcgaataattttttttaataaaaaatagaag 39445838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 17220335 - 17220478
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||| ||||| || |||||||| ||   |||||| |||||||||||| ||||||||||| |||||| ||   |||||||||| |||||||||  |    
T  17220335 ataggcatggcaatggggcggggtggggacgggttttaccttctccgtccccatacccgattctcatatacttacccgttaccctatccatatccaacag 17220434  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggt 286  Q
     |||||||||| ||| | |||| |||||| ||| || |||||||    
T  17220435 ggatgagaaattgaatcccatccccgtccccgatgggttcgggt 17220478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 337
Target Start/End: Original strand, 34021127 - 34021287
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccac-g 274  Q
    ||||| ||||||||||||  || |||||| | |||||| |||  ||||||||| |||||||||| || |||||||||| |||||||||| |||||| | |    
T  34021127 ttttatattctccgtccctatatccgattatcatatacttatccgttaccctactcatatccaacggggatgagaaattgaacctcatccccgtccccgg 34021226  T
Q  275 acggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaa 337  Q
    |||| ||| |||||| ||| | ||| ||||||||  |||||||||||| ||| || |||||||    
T  34021227 acgggttcaggtatc-ccgccccat-cccgtccccacattgaataattgtttttaataaaaaa 34021287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 31325013 - 31325082
Alignment:
Q  273 cgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||| |||||||||| ||| ||||||||||| || ||||||||||||||||| || |||||||||||||    
T  31325013 cgacgggttcgggtatccccgcctcatccccgttcccgcattgaataatttttt-taataaaaaatagaag 31325082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 18151083 - 18151200
Alignment:
Q  153 caatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaa 252  Q
    ||||| ||||||||||| || |||||||| ||| | |||||| ||||| | ||| |||||| ||  ||||| ||||| |||||| | ||| ||| |||||    
T  18151083 caatggggtggggtggggacgaattttaccttccctgtccccataccctactctcatatacttacctgttagcctatccatatctagtggggattagaaa 18151182  T
Q  253 tcgaacctcatctccgtc 270  Q
    |||||||||||| |||||    
T  18151183 tcgaacctcatccccgtc 18151200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 9642836 - 9642696
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| ||||||||||| ||   |||||| ||| || ||||| ||| | ||||| |||||| ||   |||| ||||  ||||||||||||     
T  9642836 taggcatggcaatggggtggggtggggacgggttttaccttccccatccccatactctattctcatatacttacccgttatcctacccatatccaatggg 9642737  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgg 284  Q
    |||||||||||||||| |||  |||||| |||||| |||||    
T  9642736 gatgagaaatcgaaccccatacccgtccccgacgggttcgg 9642696  T

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Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 316
Target Start/End: Original strand, 20399287 - 20399427
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    ||||||||||  ||||||| ||||| ||||| |||||| ||  | ||||| ||  |||| ||||  | |||||||||| ||||| |||| |||||| |||    
T  20399287 ttttacattcctcgtccccatacccaattctcatatacttacctattaccttacccatacccaacagggatgagaaattgaaccccatccccgtccccga 20399386  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattga 316  Q
    ||| ||||| |||| | | |||||||||||||| |||||||    
T  20399387 cgggttcggttatccctgcctcatccccgtccccgcattga 20399427  T

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Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 28077370 - 28077299
Alignment:
Q  231 catatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccc 302  Q
    ||||||||||| |||||||||||| || |||||| ||||||  ||||| || ||||||||||| ||||||||    
T  28077370 catatccaatgaagatgagaaatcaaatctcatccccgtccctgacgggttagggtatctccgcctcatccc 28077299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 6389035 - 6388894
Alignment:
Q  144 taggcatgacaatgaggtgggg-tgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    |||||||| |||||||| |||| |||| ||   |||||| ||| |||||||| ||| | | ||| |||||| ||  ||||||||||  ||||||||  ||    
T  6389035 taggcatggcaatgaggcgggggtggggacgggttttaccttccccgtccccatactctactctcatatacttacctgttaccctacccatatccagcgg 6388936  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgg 284  Q
     |||||||||||||| |||||| |||||| |||||| |||||    
T  6388935 ggatgagaaatcgaatctcatccccgtccccgacgggttcgg 6388894  T

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Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 343
Target Start/End: Complemental strand, 36132297 - 36132186
Alignment:
Q  231 catatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatat 330  Q
    ||||| ||| || |||||||||| ||| ||||||  | ||| |||| | |||||||||||||| | ||||| ||||||   ||||||||||||||| ||     
T  36132297 catattcaacggggatgagaaattgaatctcatccacatccccgacaggttcgggtatctccgccccatcctcgtccccatattgaataatttttt-taa 36132199  T
Q  331 taaaaaatagaag 343  Q
    |||||||||||||    
T  36132198 taaaaaatagaag 36132186  T

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Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 262
Target Start/End: Original strand, 1012249 - 1012367
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    |||||||| |||||| ||||||||||| || | |||||||||  |||||| | || |||||||| |||||| ||  ||||||| ||  |||| |||| ||    
T  1012249 ataggcatcacaatggggtggggtggggacgagttttacatttcccgtcctcatatccgattctcatatacttacctgttaccttacccatacccaacgg 1012348  T
Q  243 agatgagaaatcgaacctca 262  Q
     |||||||||| ||||||||    
T  1012349 -gatgagaaattgaacctca 1012367  T

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Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 17084565 - 17084475
Alignment:
Q  218 atgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccc 308  Q
    ||||||||| |  |||| ||| ||| ||||||||||||||  ||||| |||||| |||||| || ||||||| ||||||||| ||| ||||    
T  17084565 atgttacccaacccatacccattggggatgagaaatcgaatttcatccccgtcctcgacgggtttgggtatccccgtctcattcccatccc 17084475  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 9476450 - 9476393
Alignment:
Q  231 catatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtat 288  Q
    ||||||||  || |||||||||||||| |||||| |||||| | ||||||||||||||    
T  9476450 catatccagcggggatgagaaatcgaatctcatccccgtccccaacggattcgggtat 9476393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 15174267 - 15174159
Alignment:
Q  219 tgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaat 318  Q
    ||||||||||  ||||| |||||| |||||||||| ||| || ||| |||||| | | || |||||||||  ||| | |||||||||||| ||| |||||    
T  15174267 tgttaccctacccatattcaatggggatgagaaattgaatcttatccccgtccccaatgggttcgggtattcccgccccatccccgtccccgcagtgaat 15174168  T
Q  319 -aatttttt 326  Q
     ||||||||    
T  15174167 caatttttt 15174159  T

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Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 35215245 - 35215289
Alignment:
Q  295 ctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||||||||||||||||||| || || || |||||||||    
T  35215245 ctcatccccgtccctgcattgaataaattcttttaataaaaaata 35215289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 31127232 - 31127065
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||||||| |||||||| ||||||||||| |||||| ||   |||||||||  ||||||||| ||  ||||||||| ||||| |||| |||||| |||    
T  31127232 ttttacattccccgtccccatacccgattctcatatacttacccgttaccctacccatatccaacgggaatgagaaattgaaccccatccccgtccccga 31127133  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| ||| | ||||| |||||  |||||||||||||||||| | |||||||||||||    
T  31127132 cgggttcgggtatccccgccccatcctcgtcctcgcattgaataattttttaaaataaaaaatagaag 31127065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 54316794 - 54316961
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    ||||||||||||| ||||| ||||||||||| |||||  || | |||||||||| |||||| ||||| |||||||||| ||||| |||| | |||  |||    
T  54316794 ttttacattctccatccccatacccgattctcatatatttacacgttaccctatccatatcgaatggggatgagaaattgaaccccatccctgtctccga 54316893  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| ||| | ||||||| |||| |||||||||||| |||| || |||||||||||||    
T  54316894 cgggttcgggtatccccgccacatccccttccccgcattgaataatattttttaataaaaaatagaag 54316961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 4557774 - 4557579
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    ||||||| |||||| || || ||||| |||  |||| ||||| || ||||| ||||||||||| |||||  ||   |||||||||| |||| || | ||     
T  4557774 taggcataacaatggggcggagtggggacaggttttgcattccccatccccatacccgattctcatatatttacccgttaccctatccatacccgacggg 4557675  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| |||||||||| |||||| |||||| || ||||||||||| | ||||||||||||  |||||||||||||||| || |||||||||    
T  4557674 gatgagaaattgaacctcatccccgtccccgacgggtttgggtatctccgccccatccccgtccccacattgaataattttttttaataaaaaata 4557579  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 289
Target Start/End: Complemental strand, 41937518 - 41937373
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| ||||||||||| ||   |||||||||| ||||| || ||||||||||| |||||  ||  |||||||||| |||||||||| |||    
T  41937518 taggcatggcaatggggtggggtggggacgggttttacattccccgtctccatacccgattctcatatatttacctgttaccctactcatatccaacgga 41937419  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    |||||||||| ||||| |||| |||||| |||||| ||||||||||    
T  41937418 gatgagaaattgaaccccatccccgtcctcgacgggttcgggtatc 41937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 34025578 - 34025771
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || || ||||| ||  ||||||| |||||||||||| |||| |||||| |||||| ||   |||||||||||||||||||| ||     
T  34025578 taggcatggcaatggggcggagtggggacggattttaccttctccgtccccatacctgattctcatatacttacccgttaccctattcatatccaacggg 34025677  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||| | |||||| |||||| |||||||||| ||| | |||||||||      || |||||||||||| || |||||||||||||    
T  34025678 gatgagaaattgaatctcagccccgtccccgacgggttcgggtatccccgccccatccccgt------atcgaataattttttttaataaaaaatagaag 34025771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 176 - 342
Target Start/End: Original strand, 52197803 - 52197969
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| |||||||||||| ||| ||||||| |||||| ||   ||||| ||| | |||||||| |||||||||||||  || |||||| |||||| |||    
T  52197803 ttttaccttctccgtccccatactcgattctcatatacttacccgttactctacttatatccaacggagatgagaaattaaatctcatccccgtccccga 52197902  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaa 342  Q
    ||| ||||| |||| ||| | |||||||||| | |||||||| |||||||| || ||||||||||||    
T  52197903 cgggttcggttatccccgccccatccccgtctccgcattgaagaattttttttaataaaaaatagaa 52197969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 327
Target Start/End: Complemental strand, 7470246 - 7470064
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| ||     
T  7470246 taggcatggcaatggggcggggtggggacgggttttaccttc-ccgtccccatacccgattctcatatacttacccgttaccctacccatacccaacggg 7470148  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttta 327  Q
    |||||||||| ||| |||||| |||||| |||||| || ||||||| ||| | |||||||||||  ||||||||||||||||||    
T  7470147 gatgagaaattgaatctcatccccgtccccgacgggtttgggtatccccgccccatccccgtcctcgcattgaataatttttta 7470064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 342
Target Start/End: Complemental strand, 17146576 - 17146422
Alignment:
Q  187 ccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggt 286  Q
    |||||||| ||||||||||| |||||| ||   |||||||||  ||||  ||| |||||||| |||| ||| |||||| |||||| ||| || |||||||    
T  17146576 ccgtccccatacccgattctcatatacttacccgttaccctacccatactcaacggagatgacaaattgaatctcatccccgtccccgatgggttcgggt 17146477  T
Q  287 atctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaa 342  Q
    ||| ||| | |||||||||||| ||||||||||||||||| || ||||||||||||    
T  17146476 atccccgccccatccccgtccccgcattgaataatttttt-taataaaaaatagaa 17146422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 34154035 - 34154233
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| || |||||||| ||   |||||| ||| |||||||||||||||||||  |||||| ||   |||||||||  |||| || | ||     
T  34154035 taggcatgacaatggggcggggtggggacgggttttaccttccccgtccccgtacccgattcacatatacttacccgttaccctacccataccccacggg 34154134  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| |||||| |||||| |||||||||| ||| ||||||||| ||||   || || ||||||||| || |||||||||||||    
T  34154135 gatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccgcctcatccccatccc-ctatcgattaattttttttaataaaaaatagaag 34154233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 44638894 - 44639092
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| ||     
T  44638894 taggcatgacaatgtggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttacccgttaccctacccatacccaacggg 44638993  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
     ||||||||| ||| |||||| |||||| |||||| ||| | |||| ||| | ||||| ||||||  |||||||| ||||||| || |||||||||||||    
T  44638994 aatgagaaattgaatctcatccccgtccccgacgggttcagatatccccgccccatcctcgtccccacattgaat-attttttttaataaaaaatagaag 44639092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 49025333 - 49025498
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||| | ||||||||||| |||||| ||   |||||||||  ||||||||| || |||||||||| ||| | |||| |||| | |||    
T  49025333 ttttaccttccccgtcctcatacccgattctcatatacttacccgttaccctacccatatccaacggggatgagaaattgaatcacatcaccgttcccga 49025432  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| ||| | ||| |||||||| ||||||||||||||||| || |||||||||||||    
T  49025433 cgggttcgggtatccccgccccat-cccgtccccgcattgaataatttttt-taataaaaaatagaag 49025498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 23547447 - 23547247
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||  ||| |||||||| ||||||||||| |||||| |||  |||||||||  |||| |||| ||     
T  23547447 taggcatggcaatggggcggggtggggacgggttttatcttccccgtccccatacccgattctcatatacttatccgttaccctacccatacccaacggg 23547348  T
Q  244 gatgagaaatcgaa------cctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaa 337  Q
    |||||||||| |||      || | || |||||| |||||| |||||||||| ||| |||||||||||||| ||||||||||||||||| || |||||||    
T  23547347 gatgagaaattgaattccatccccgtccccgtccccgacgggttcgggtatccccgcctcatccccgtccccgcattgaataatttttt-taataaaaaa 23547249  T
Q  338 ta 339  Q
    ||    
T  23547248 ta 23547247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 339
Target Start/End: Original strand, 29283954 - 29284149
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||| ||||| || |||||||| ||   |||||| |||||||||| | ||||||||||| |||||| ||   |||||||||| |||| |||| ||    
T  29283954 ataggcatggcaatg-ggcggggtggggacgggttttaccttctccgtcctcatacccgattctcatatacttacccgttaccctatccatacccaacgg 29284052  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctc-atccccgtccctgcattgaataattttttatattaaaaaata 339  Q
     |||||||||| ||| | |||| |||||| |||||| |||||||||| | | | | | ||||||||| ||||||||||||||||| || |||||||||    
T  29284053 ggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccctgccccgacccccgtccccgcattgaataatttttt-taataaaaaata 29284149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 53631520 - 53631722
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    ||||||||||||||  ||  ||||||||| | ||||||||||  ||| | | |||| |||||| |||||| |||  |||| | ||| ||||| ||||||     
T  53631520 taggcatgacaatggagtaaggtgggtacgagttttacattcctcgttctcatacctgattcttatatacttatccgttatcatatacatattcaatggg 53631619  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaata---attttttatattaaaaaatag 340  Q
    |||||||||| |||||||||| |||||  | |||| |||||||||| ||| ||||||| | |||| ||||||||||    |||||| || ||||||||||    
T  53631620 gatgagaaattgaacctcatccccgtcaccaacgggttcgggtatccccgcctcatccacatccccgcattgaatatttgttttttttaataaaaaatag 53631719  T
Q  341 aag 343  Q
    |||    
T  53631720 aag 53631722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 295
Target Start/End: Original strand, 39728301 - 39728452
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| || | |||||| ||| |||||||| ||||||||||| |||||| ||  ||||||||||  |||| |||| ||     
T  39728301 taggcatggcaatggggcggggtggggacgagttttaccttccccgtccccatacccgattctcatatacttacctgttaccctacccatacccaacggg 39728400  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    |||||||||| ||| |||||| || ||| |||||| || ||||||| |||||    
T  39728401 gatgagaaattgaatctcatccccatccccgacgggtttgggtatccccgtc 39728452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 343
Target Start/End: Original strand, 44179046 - 44179144
Alignment:
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| |||||| |||| | |||||||||| ||| | |||||||||||| ||||||||||||||||| || |||||||||||||    
T  44179046 gatgagaaattgaatctcatccccgtccccgacaggttcgggtatccccgccccatccccgtccccgcattgaataatttttt-taataaaaaatagaag 44179144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 49579715 - 49579881
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| |||| |||||| || ||| ||   ||||||||| ||||||| || || |||||||||| |||  ||||| |||||| |||    
T  49579715 ttttaccttccccgtccccatacctgattctcatgtacttacccgttaccctactcatatctaacggggatgagaaattgaatttcatccccgtccccga 49579814  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
     || ||||||||||  || | |||||||||||| ||||| ||||||||||| || |||||||||||||    
T  49579815 agggttcgggtatccacgccccatccccgtccccgcattaaataatttttt-taataaaaaatagaag 49579881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 44107268 - 44107063
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| |||||  | |||||||| || | |||||| ||| |||||| | ||||||||||| |||||| ||   |||||||||  |||| |||| ||     
T  44107268 taggcatggcaatggagcggggtggggacgagttttaccttccccgtcctcatacccgattctcatatacttacccgttaccctacccatacccaacggg 44107169  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccg------tccctgcattgaataattttttatattaaaaaa 337  Q
    |||||||||| ||| |||||| |||||| |||||| |||||||||  ||| | ||||||||      |||| |||||||||||||||||  || ||||||    
T  44107168 gatgagaaattgaatctcatccccgtccccgacgggttcgggtattcccgccccatccccgtccccgtccccgcattgaataatttttttaataaaaaaa 44107069  T
Q  338 tagaag 343  Q
    ||||||    
T  44107068 tagaag 44107063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 308
Target Start/End: Original strand, 44252360 - 44252524
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| ||  ||||||| || | |||||| ||  |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| ||     
T  44252360 taggcatggcaatggggcagggtggggacgagttttacctttcccgtccccatacccgattctcatatacttacccgttaccctacccatacccaacggg 44252459  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccc 308  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| ||| | ||||||||||||    
T  44252460 gatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatccccgtccc 44252524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 339
Target Start/End: Complemental strand, 22536281 - 22536118
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||  || | |||||| |||| | ||| |||||||||| ||||| |||| || |||||||||| ||| |||||| |||||| |||    
T  22536281 ttttaccttccccgtccctatatctgattctcatatgcttatctgttaccctactcatacccaacggggatgagaaattgaatctcatccccgtcctcga 22536182  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    ||| |||||||||| ||    ||||||| |||| | || |||||||||||| || |||||||||    
T  22536181 cgggttcgggtatccccactccatccccatccccgtatcgaataattttttttaataaaaaata 22536118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 55439116 - 55438950
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    ||||||||||  ||||||| || |||||||| |||||| ||   |||||||||  ||||||||| || |||||||| | ||||| ||||||| ||| |||    
T  55439116 ttttacattcctcgtccccatatccgattctcatatacttacccgttaccctacccatatccaacggggatgagaagttgaaccccatctccatcctcga 55439017  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| | | | |||||||||||   |||| ||||||||||| || | |||||||||||    
T  55439016 cgggttcgggtatc-ctgccccatccccgtccgcacatttaataattttttttaatgaaaaatagaag 55438950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 4016503 - 4016326
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||||||||| || |||||||| ||   |||| ||||| |||||||| |||| |||||| |||||  |||  |||||||||  |||||||||  |    
T  4016503 ataggcatgacaatggggcggggtggggacgggttttgcattccccgtccccataccagattcttatatatttatccgttaccctacccatatccaacag 4016404  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataat 321  Q
     |||||||||| |||||||||| || ||  |||||  || ||||||| ||||| ||||||||||||  |||| ||||||    
T  4016403 ggatgagaaattgaacctcatc-ccttctccgacgagtttgggtatccccgtcccatccccgtccccacatttaataat 4016326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 43582311 - 43582394
Alignment:
Q  259 ctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||| |||||| |||||| |||||||||| ||| ||||||||| |||| |||| |||||||||||| || |||||||||||||    
T  43582311 ctcatccccgtccccgacgggttcgggtatccccgcctcatccccatccccgcatcgaataatttttt-taataaaaaatagaag 43582394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 343
Target Start/End: Original strand, 52572277 - 52572426
Alignment:
Q  188 cgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggta 287  Q
    ||||||| ||||||||||| |||||| ||   |||||||||  | || |||| || |||||||||| ||| | |||| |||||| |||||| |||||       
T  52572277 cgtccccatacccgattctcatatacttacccgttaccctacccgtacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcggc-- 52572374  T
Q  288 tctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
       ||| | |||||||||||| ||||||||||||||||| || |||||||||||||    
T  52572375 ---ccgccccatccccgtccccgcattgaataatttttt-taataaaaaatagaag 52572426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 343
Target Start/End: Original strand, 29841972 - 29842124
Alignment:
Q  190 tccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    ||||| || |||||||| |||||| |||  |||||  || ||||| |||| |  |||||||||| ||| |||||| |||||| |||||| ||||||||||    
T  29841972 tccccatatccgattctcatatacttatccgttactttactcatacccaacgtggatgagaaattgaatctcatccccgtccccgacgggttcgggtatc 29842071  T
Q  290 tccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
     ||| | ||||||  |||| | ||| |||| |||||| || |||||||||||||    
T  29842072 gccgccccatccctatccccgtatttaatattttttt-taataaaaaatagaag 29842124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 23580489 - 23580645
Alignment:
Q  187 ccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggt 286  Q
    |||||||| ||||||||||| |||||| ||  ||||||  ||   |||| ||| || |||||||||| |||  ||||| |||||  |||||| |||||||    
T  23580489 ccgtccccatacccgattctcatatacttacctgttacattacctatattcaacggggatgagaaattgaatttcatccccgtctccgacgggttcgggt 23580588  T
Q  287 atctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| ||  | ||||||| |||| | |  |||||||||||| || |||||||||||||    
T  23580589 atccccaccccatccccatccccgtaacgaataattttttttaataaaaaatagaag 23580645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 327
Target Start/End: Complemental strand, 30616773 - 30616590
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   ||||||  || || ||||| ||||| ||||| |||||| ||  ||||||||||  |||||||||        
T  30616773 taggcatggcaatggggcggggtggggacgggttttaccatccccatccccataccctattctcatatacttacttgttaccctacccatatccaacaag 30616674  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttta 327  Q
    ||||||||||| |||| |||  |||||| |||||| |||||| ||| | | | ||||||||| || ||| ||||| ||||||||    
T  30616673 gatgagaaatctaaccccatacccgtccccgacgggttcggggatcccagccccatccccgtacccgcagtgaattatttttta 30616590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 42758019 - 42758146
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| || | |||||| ||   |||||||||| || |  || ||||||||||| |||||| ||   |||||||||  ||||||||| ||     
T  42758019 taggcatgacaatggggcgaggtggggacgggttttacattccccatttccatacccgattctcatatacttacccgttaccctacccatatccaacggg 42758118  T
Q  244 gatgagaaatcgaacctcatctccgtcc 271  Q
    |||||||||| ||||| |||| ||||||    
T  42758119 gatgagaaattgaaccccatccccgtcc 42758146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 44953804 - 44953710
Alignment:
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| | |||| |||| | |||| | |||||||||| ||| | ||||| |||||| ||||||||||||||||| || |||||||||    
T  44953804 gatgagaaattgaatcacatccccgttcccgacaggttcgggtatccccgccccatcctcgtccccgcattgaataatttttt-taataaaaaata 44953710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 289
Target Start/End: Complemental strand, 23154477 - 23154331
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||| ||||  ||||||||||| ||   |||||| ||| |||| |   ||||||||||| |||||| |||  |||||||||  ||||| ||| ||    
T  23154477 ataggcatggcaatagggtggggtggggacgggttttaccttccccgttcttatacccgattctcatatacttatccgttaccctacccatattcaacgg 23154378  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
     ||||||||||  || ||||||  ||||| |||||| ||||||||||    
T  23154377 ggatgagaaattaaatctcatcctcgtccccgacgggttcgggtatc 23154331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 322
Target Start/End: Complemental strand, 48307005 - 48306827
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| |||| |||||| ||   |||||| ||| ||||| || || |||||||| |||||  ||    |||||||| |||||||||| ||     
T  48307005 taggcatggcaatggggtgtggtggggacgggttttaccttccccgtctccatatccgattcttatatatttacccattaccctactcatatccaacggg 48306906  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatt 322  Q
     ||||||||| ||| |||||  |||| | |||||| ||| |||||| ||| |||||||  |||||  ||||||||||||    
T  48306905 aatgagaaattgaatctcattcccgtacccgacgggttcaggtatccccgcctcatccatgtccccacattgaataatt 48306827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 44162403 - 44162472
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatac 213  Q
    |||||||| ||||| || |||||||| || | |||||| ||| |||||||| ||||||||||| ||||||    
T  44162403 taggcatggcaatggggcggggtggggacgagttttaccttccccgtccccatacccgattctcatatac 44162472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 144 - 339
Target Start/End: Original strand, 20774251 - 20774445
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  ||||||||| ||     
T  20774251 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttacccgttaccctacccatatccaacggg 20774350  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| ||| | |||||||||||| ||||||||||||||||| || |||||||||    
T  20774351 gatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaataatttttt-taataaaaaata 20774445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 176 - 342
Target Start/End: Original strand, 24710509 - 24710674
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| ||||| || ||||||||||| |||||| ||  ||||||||||   |||  ||| || |||||||||| ||| |||||| |||||| |||    
T  24710509 ttttaccttccccgtctccatacccgattctcatatacttacctgttaccctacctatactcaacggggatgagaaattgaatctcatccccgtccccga 24710608  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaa 342  Q
    ||| |||||||||| ||| | |||||||||||| ||||||||||||||||| || ||||||||||||    
T  24710609 cgggttcgggtatccccgccccatccccgtccccgcattgaataatttttt-taataaaaaatagaa 24710674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 305
Target Start/End: Complemental strand, 40087927 - 40087766
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||||||     
T  40087927 taggcatgacaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttacccgttaccctacccatacccaatggg 40087828  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgt 305  Q
    |||||||||| ||| |||||| |||||| |||||| |||||||||| ||| | |||||||||    
T  40087827 gatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccgccccatccccgt 40087766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 339
Target Start/End: Original strand, 28297552 - 28297746
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| |||||||| |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   ||||||| |  |||| |||| ||     
T  28297552 taggcatggcaatgaggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttacccgttacccgacccatacccaacggg 28297651  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
     ||||||||| ||| | |||| |||||| |||||| |||||||||| ||| | |||||| ||||| ||||||||||||||||| || |||||||||    
T  28297652 aatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatccctgtccccgcattgaataatttttt-tagtaaaaaata 28297746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 34610725 - 34610891
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| || |||||||||| ||| ||||||  ||||| |||    
T  34610725 ttttaccttccccgtccccatacccgattctcatatacttactcgttaccctacccatacccaacggggatgagaaattgaatctcatcctcgtccccga 34610824  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| | | | ||||||||||||  |||||||||||||||| || |||||||||||||    
T  34610825 cgggttcgggtatccctgccccatccccgtccccacattgaataatttttt-taataaaaaatagaag 34610891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 13390074 - 13390267
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  ||||||||| ||     
T  13390074 taggcatgacaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttaaccgttaccctacccatatccaacggg 13390173  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| ||       |||| |||| |||| |||||||||||| || |||||||||||||    
T  13390174 gatgagaaattgaatcccatccccgtccccgacgggttcgggtatcccc------accccatccccgcatcgaataattttttttaataaaaaatagaag 13390267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 29871753 - 29871555
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    ||||||||||||||||||||||| |  ||  |||||||||||||| || || ||||||||||| |||||| ||  |||||||||| |||||  |||  |     
T  29871753 taggcatgacaatgaggtggggtagagacggattttacattctccatctccatacccgattctcatatacttacttgttaccctactcatactcaactgg 29871654  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| || ||  ||| |||||| |||||| ||||| |||| ||| ||||| | ||||||  ||||||||||||||||  | || ||||||||||    
T  29871653 gatgagaaattgagccctatccccgtccccgacgggttcggatatccccgcctcat-ctcgtccccacattgaataatttttttaaatataaaatagaag 29871555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 49742358 - 49742191
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||| ||||| |||| ||| || |||||||| |||||  |||  |||||||||| |||||| || || |||||||||| |||||||||| ||||||   |    
T  49742358 ttttgcattccccgttcccatatccgattctcatatatttatccgttaccctatccatatctaacggggatgagaaattgaacctcatccccgtccctaa 49742259  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| || | ||||| ||| | ||||||||||||  |||||||||||||||| || |||||||||||||    
T  49742258 cgggtttgtgtatccccgccccatccccgtccccacattgaataattttttttaataaaaaatagaag 49742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 50427123 - 50426925
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    ||||||||  ||||||| |||||||| | |  |||||| |||||| ||||| ||||||||||| |||||| ||   |||||||||  ||||| ||| |      
T  50427123 taggcatggtaatgaggcggggtggggataggttttaccttctccatccccatacccgattctcatatacttacccgttaccctacccatattcaacgag 50427024  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| |||||| |||||| |||||||||| ||  ||||||||| |||| | || ||||||||||||  | |||||||||||||    
T  50427023 gatgagaaattgaatctcatccccgtcc-cgacgggttcgggtatccccacctcatccccatccccgtatcgaataatttttttcaataaaaaatagaag 50426925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 146 - 343
Target Start/End: Complemental strand, 44615943 - 44615747
Alignment:
Q  146 ggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggaga 245  Q
    |||||| ||||| || |||||||| ||   |||||||||| |||||||| ||||||||||| || ||| ||   |||||||||  |||||  || || ||    
T  44615943 ggcatggcaatggggcggggtggggacgggttttacattccccgtccccatacccgattctcatgtacttacccgttaccctacccatatttaacgggga 44615844  T
Q  246 tgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctc-atccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||| ||||| |||| ||||||  ||||| ||||||||| |||  ||| ||||||||||| ||||||||||||||||| || |||||||||||||    
T  44615843 tgagaaattgaaccccatccccgtccctgacgggttcgggtat-tcccactctatccccgtccccgcattgaataatttttt-taataaaaaatagaag 44615747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 36187691 - 36187491
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| || ||||||||  ||||| ||   |||||||||  |||| |||| ||     
T  36187691 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatatccgattctcgtatacttacccgttaccctacccatacccaacggg 36187592  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaata-attttttatattaaaaaatagaa 342  Q
    |||||||||| ||| | |||| |||||| ||| ||||||||||||| ||  | |||||||||||| ||||||||||  |||||| || ||||||||||||    
T  36187591 gatgagaaattgaatcccatccccgtccccgatggattcgggtatccccaccccatccccgtccccgcattgaatattttttttttaataaaaaatagaa 36187492  T
Q  343 g 343  Q
    |    
T  36187491 g 36187491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 343
Target Start/End: Original strand, 29936112 - 29936234
Alignment:
Q  220 gttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaata 319  Q
    |||||||||  ||||||||| || |||||||||| ||| | |||| |||||| |||||| |||||||||| ||| | ||| |||||||  ||||||||||    
T  29936112 gttaccctacccatatccaacggggatgagaaattgaatcacatccccgtccccgacgggttcgggtatccccgccccattcccgtcctcgcattgaata 29936211  T
Q  320 attttttatattaaaaaatagaag 343  Q
    ||||||| || |||||||||||||    
T  29936212 atttttt-taataaaaaatagaag 29936234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 343
Target Start/End: Original strand, 44792626 - 44792823
Alignment:
Q  146 ggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggaga 245  Q
    |||||| ||||| || |||||||| ||   |||||||||| |||||||| ||||||||||| |||||| ||   |||||||||  ||||| ||| || ||    
T  44792626 ggcatggcaatggggcggggtggggacgggttttacattccccgtccccatacccgattctcatatacttacccgttaccctacccatattcaacgggga 44792725  T
Q  246 tgagaaatcgaacctcat-ctccgtccacgacggattcgggtatctccgtct-catccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||| ||||| ||| | |||||| |||||| ||||||||| |||  || ||||||||| || ||||||||||||||||| || ||| |||||||||    
T  44792726 tgagaaattgaaccccatcccccgtccccgacgggttcgggtat-tcccactccatccccgttcccgcattgaataatttttt-taataacaaatagaag 44792823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 343
Target Start/End: Complemental strand, 45866655 - 45866456
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||| | ||| ||||||| |||||| ||   ||||| |||   ||| |||| ||     
T  45866655 taggcatggcaatggggcggggtggggacgtgttttaccttccccgtcctcatactcgattctcatatacttacccgttactctacctatacccaacggg 45866556  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||| ||| ||||||||||||| ||||||||||||||||| ||  ||||||||| |||| | || ||||| |||||| || |||||||||||||    
T  45866555 gataagaaattgaatctcatctccgtccccgacggattcgggtatccccacctcatccccatccccgtatcgaatatttttttttaataaaaaatagaag 45866456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 289
Target Start/End: Complemental strand, 9983355 - 9983210
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || ||| |||| || | |||||||||| ||||| || ||||||||||| | |||| ||  ||||||||||  ||||||||  ||     
T  9983355 taggcatggcaatggggcgggatgggaacgagttttacattccccgtctccatacccgattctcacatacttacctgttaccctacccatatccagcggg 9983256  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    ||||| ||||  ||||||||| |||||| |||||||||||||||||    
T  9983255 gatgaaaaatttaacctcatccccgtccccgacggattcgggtatc 9983210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 5180670 - 5180863
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||  ||||| ||||||||||| || | |||||| ||| |||||||  ||||||||||| |||||| ||    ||||||||  ||||||||| ||     
T  5180670 taggcattgcaatggggtggggtggggacgagttttaccttccccgtccctatacccgattctcatatacttacccattaccctacccatatccaacggg 5180769  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| ||||      ||| ||||||||||||||||| ||   |||||||| |||| | || |||||||||||| || |||||||||||||    
T  5180770 gatgagaaattgaatctca------tcctcgacggattcgggtatccccacttcatccccatccccgtatcgaataattttttttaataaaaaatagaag 5180863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 304
Target Start/End: Original strand, 32594514 - 32594675
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||||||||| ||||||||||| || | | |||| |||||||| ||| || |||||| | |||||| ||   |||||||||  |||| |||| ||    
T  32594514 ataggcatgacaatggggtggggtggggacgagtattaccttctccgtacccatatccgatttttatatacttacccgttaccctacccatacccaacgg 32594613  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccg 304  Q
     |||||||||| ||| |||||| |||| | ||| || |||||||||| ||| | ||||||||    
T  32594614 ggatgagaaattgaatctcatccccgtacccgatgggttcgggtatccccgccccatccccg 32594675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 343
Target Start/End: Complemental strand, 17092430 - 17092230
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||| ||||| || |||||||| ||   |||||| |||  ||||| | || |||||||| |||| | ||   |||||||||  |||||||||  |    
T  17092430 ataggcatggcaatggggcggggtggggacgggttttaccttcctcgtcctcatatccgattctcatatgcttacccgttaccctacacatatccaacag 17092331  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaa 342  Q
     |||||||||| ||| |||||| |||||| |||||| |||||||||| ||    ||||||| |||| | || |||||||||||| || ||||||||||||    
T  17092330 ggatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccactccatccccatccccgtatcgaataattttttttaataaaaaatagaa 17092231  T
Q  343 g 343  Q
    |    
T  17092230 g 17092230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 17134609 - 17134765
Alignment:
Q  187 ccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggt 286  Q
    |||||||| ||||| ||||| |||||| ||   ||||||||| |||||  |||  | |||||||||| ||| ||||||||||||| | |||| ||||| |    
T  17134609 ccgtccccatacccaattctcatatacttacccgttaccctactcatactcaacagggatgagaaattgaatctcatctccgtccccaacgggttcggat 17134708  T
Q  287 atctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| ||  | ||||||| |||| | || |||||||||||| || |||||||||||||    
T  17134709 atccccaccccatccccatccccgtatcgaataattttttttaataaaaaatagaag 17134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 324
Target Start/End: Original strand, 23966477 - 23966657
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| || | |||||| ||| |||||||| || |||||||| |||||| ||    ||||||||  |||| |||| | |    
T  23966477 taggcatggcaatggggcggggtggggacgagttttaccttccccgtccccataaccgattctcatatacttacccattaccctacccatacccaacgaa 23966576  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttt 324  Q
    |||||||||| ||| | |||| |||||| |||||| ||| |||||| ||  | ||||||| |||| | |||||||||||||    
T  23966577 gatgagaaattgaatcccatccccgtccccgacgggttctggtatccccaccccatccccatccccgtattgaataatttt 23966657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 326
Target Start/End: Complemental strand, 35937259 - 35937104
Alignment:
Q  171 acaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtc 270  Q
    |||| |||||||||| |||||||  ||||||||||| |||||| ||  |||||||| | ||||| |||| |  ||||| |||| ||||| |||| || ||    
T  35937259 acaagttttacattccccgtccctatacccgattctcatatacttacctgttaccccactcatacccaacgacgatgacaaattgaaccccatccccatc 35937160  T
Q  271 cacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    | |||||| |||||||||| ||| | | |  ||||||| ||||| |||||||||||    
T  35937159 cccgacgggttcgggtatccccgacccgtatccgtccccgcattaaataatttttt 35937104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 51421514 - 51421641
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||  ||||| ||||||||||| ||  ||||||| |||  | ||||| ||||||||||| |||||| ||   ||||||||| |||||||||| ||     
T  51421514 taggcatcgcaatggggtggggtggggacggattttaccttcctcatccccatacccgattctcatatacttacccgttaccctactcatatccaacggg 51421613  T
Q  244 gatgagaaatcgaacctcatctccgtcc 271  Q
    |||||||||| ||| |||||| ||||||    
T  51421614 gatgagaaattgaatctcatccccgtcc 51421641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 340
Target Start/End: Original strand, 17516095 - 17516216
Alignment:
Q  220 gttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaat- 318  Q
    ||||||||||||||||||||||||||||||||||  || |||| | |||||  | | || |||||||||  ||| ||||| |||||||| ||| |||||     
T  17516095 gttaccctattcatatccaatggagatgagaaattaaatctcacccccgtcttcaatgggttcgggtattcccggctcattcccgtccccgcagtgaatc 17516194  T
Q  319 aattttttatattaaaaaatag 340  Q
    ||||||||  || |||||||||    
T  17516195 aatttttttaatgaaaaaatag 17516216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 343
Target Start/End: Complemental strand, 24237199 - 24237033
Alignment:
Q  175 attttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacg 274  Q
    ||||||| |||  ||||||| ||||||||||| |||||| ||   ||||||| |  |||| |||| || |||||||||| ||| ||||||  ||| | ||    
T  24237199 attttaccttcctcgtccccatacccgattctcatatacttactcgttaccccacccatacccaacggggatgagaaattgaatctcatcctcgtgcccg 24237100  T
Q  275 acggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||| |||||||||| ||  | |||| ||||||| ||||||||||  ||||| || |||||||||||||    
T  24237099 acgggttcgggtatccccaccccatcgccgtccccgcattgaata--tttttttaataaaaaatagaag 24237033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 23493762 - 23493643
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  ||||| ||| || |||||||||| ||| | |||| ||||||  ||    
T  23493762 ttttaccttccccgtccccatacccgattctcatatacttacccgttaccctacccatattcaacggggatgagaaattgaatcccatccccgtccctga 23493663  T
Q  276 cggattcgggtatctccgtc 295  Q
    ||| |||||||||| |||||    
T  23493662 cgggttcgggtatccccgtc 23493643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 270
Target Start/End: Complemental strand, 16433630 - 16433504
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| |||||| | || || | |||||  ||| |||||||  || ||||||||  ||||| ||   |||||| ||| ||||||||| |||    
T  16433630 taggcatgacaatggggtgggatagggacgagttttatcttccccgtccctatatccgattctcttatacttacccgttaccttatccatatccaacgga 16433531  T
Q  244 gatgagaaatcgaacctcatctccgtc 270  Q
    |||||||||| |||||||||| |||||    
T  16433530 gatgagaaattgaacctcatccccgtc 16433504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 337
Target Start/End: Original strand, 39615976 - 39616114
Alignment:
Q  199 ccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctca 298  Q
    |||||||| |||||| ||   ||||| ||||||||||||||  |||||| ||||| ||| ||||||  ||||| |||||| ||||| |||| ||  | ||    
T  39615976 ccgattctcatatacttactcgttactctattcatatccaacagagatgggaaattgaatctcatccacgtccccgacgggttcggctatccccacccca 39616075  T
Q  299 tccccgtccctgcattgaataattttttatattaaaaaa 337  Q
    ||||| |||| | || |||||||||||| || |||||||    
T  39616076 tccccatccccgtatcgaataattttttttaataaaaaa 39616114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 51421628 - 51421676
Alignment:
Q  294 tctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  51421628 tctcatccccgtccccgcattgaataatttttt-taataaaaaatagaag 51421676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 337
Target Start/End: Original strand, 13020436 - 13020499
Alignment:
Q  273 cgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaa 337  Q
    |||||| |||||||||| ||| |||||||||||||| ||||||||||||| ||| || |||||||    
T  13020436 cgacgggttcgggtatc-ccgcctcatccccgtccccgcattgaataattgtttttaataaaaaa 13020499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 289
Target Start/End: Original strand, 38686270 - 38686417
Alignment:
Q  142 tataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatg 241  Q
    |||||||||||||||| || |||||||| ||  |||| || ||| || ||||| | || |||||| |||||  |||  |||||||||  | ||||||| |    
T  38686270 tataggcatgacaatggggcggggtggggacggatttcaccttccccatccccatccctgattctcatatatttatccgttaccctacccttatccaacg 38686369  T
Q  242 gagatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    | ||| |||||| ||| |||||| |||||| |||||| ||| ||||||    
T  38686370 gggatcagaaattgaatctcatccccgtccccgacgggttcaggtatc 38686417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 42439987 - 42439942
Alignment:
Q  297 catccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||||| ||||||||||||||||| || |||||||||||||    
T  42439987 catccccgtccccgcattgaataatttttt-taataaaaaatagaag 42439942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 49251090 - 49251045
Alignment:
Q  297 catccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||||| ||||||||||||||||| || |||||||||||||    
T  49251090 catccccgtccccgcattgaataatttttt-taataaaaaatagaag 49251045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 16903199 - 16903268
Alignment:
Q  220 gttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    |||||||||  ||||||||  || |||||||||||||| | |||| |||||| |||||| ||||||||||    
T  16903199 gttaccctacccatatccatcggggatgagaaatcgaatcccatccccgtccccgacgggttcgggtatc 16903268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 12494767 - 12494827
Alignment:
Q  283 gggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||||| ||| ||||||||| |||  |||||||||| |||||| || |||||||||||||    
T  12494767 gggtatccccgcctcatccccatcctcgcattgaatatttttttttaataaaaaatagaag 12494827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 271
Target Start/End: Complemental strand, 25155366 - 25155238
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||| ||||| ||| ||||||| ||   |||||| |||  ||||||| ||||| | | | |||| | |||  ||||||||| |||||||||| ||    
T  25155366 ataggcatggcaatggggtagggtggggacgggttttaccttcatcgtccccataccctactttcatatgcttatccgttaccctactcatatccaacgg 25155267  T
Q  243 agatgagaaatcgaacctcatctccgtcc 271  Q
     ||||||||||| ||  ||||||||||||    
T  25155266 ggatgagaaatcaaatttcatctccgtcc 25155238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 34289249 - 34289201
Alignment:
Q  32 ccaaaagcttagggctgttatgttggttgaggcgattgtgatgcaaatc 80  Q
    ||||||| | ||||| |||| ||||||||||| ||||||||||||||||    
T  34289249 ccaaaagttgagggcggttaggttggttgaggagattgtgatgcaaatc 34289201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 13830355 - 13830553
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||  | ||||||||  |||| |||| ||     
T  13830355 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttacctattaccctacccatacccaacggg 13830454  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| ||| | ||||||| |||| ||||||||||||||||| || |||||||||||||    
T  13830455 gatgagaaattgaatcacatccccgtccccgacgggttcgggtatccccgccccatccccatccccgcattgaataatttttt-taataaaaaatagaag 13830553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 144 - 339
Target Start/End: Original strand, 30846564 - 30846758
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || ||| |||| || |||||||| ||| |||||||| ||||||||||| |||||| ||   |||||||||  |||| |||| ||     
T  30846564 taggcatggcaatggggcgggatggggacgaattttaccttccccgtccccatacccgattctcatatacttagccgttaccctacccatacccaacggg 30846663  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| ||| | |||||||||||  ||||||||||||||||| || |||||||||    
T  30846664 gatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatccccgtcctcgcattgaataatttttt-taataaaaaata 30846758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 142 - 343
Target Start/End: Complemental strand, 10208901 - 10208701
Alignment:
Q  142 tataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatg 241  Q
    |||||||||| ||||| || |||||||| ||   |||||| ||| |||| | | ||||||||||| |||||| ||   |||||||||  ||||||||| |    
T  10208901 tataggcatggcaatggggcggggtggggacgggttttaccttccccgttctcatacccgattctcatatacttacccgttaccctacccatatccaacg 10208802  T
Q  242 gagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaataga 341  Q
    | |||||||||| ||| |||||| |||||| |||||| |||||||||| ||| | ||||| | |||| ||||||||||||||||| || |||||||||||    
T  10208801 gggatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccgccccatcctcttccccgcattgaataatttttt-taataaaaaataga 10208703  T
Q  342 ag 343  Q
    ||    
T  10208702 ag 10208701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 36128577 - 36128383
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| || |||||||| |||||| ||   |||||||||  |||| |||| ||     
T  36128577 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatatccgattctcatatacttacccgttaccctacccatacccaacggg 36128478  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    ||||| |||| ||| |||||| |||||| |||||| ||| |||||| ||| | |||||||||| ||||||||||||||||||| || |||||||||    
T  36128477 gatgaaaaattgaatctcatccccgtccccgacgggttcaggtatccccgccccatccccgtctctgcattgaataatttttt-taataaaaaata 36128383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 162 - 343
Target Start/End: Complemental strand, 24414583 - 24414403
Alignment:
Q  162 ggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctc 261  Q
    |||||||| || | |||||| ||| |||||| | ||||| ||||| ||| || ||   |||||||||  |||| |||| || |||||||||| ||| | |    
T  24414583 ggggtggggacgagttttaccttccccgtccacataccctattctcatacacttacccgttaccctacccatacccaacggggatgagaaattgaatccc 24414484  T
Q  262 atctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||| |||||| |||||||||| ||| | |||||||||||| ||||||||||||||||| || |||||||||||||    
T  24414483 atccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaataatttttt-taataaaaaatagaag 24414403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 343
Target Start/End: Complemental strand, 6028326 - 6028160
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||||||| |||||||| ||||||||||| |||| | ||  ||||||||||   ||||||||  | |||||||||| ||||| |||| |||||| |||    
T  6028326 ttttacattccccgtccccatacccgattcttatatccttacctgttaccctaccaatatccaacagggatgagaaattgaaccccatccccgtccccga 6028227  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| ||| | ||||| |||||  ||||||||| || |||| || |||||||||||||    
T  6028226 cgggttcgggtatccccgccccatcctcgtcctcgcattgaat-atattttttaataaaaaatagaag 6028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 326
Target Start/End: Complemental strand, 13705779 - 13705649
Alignment:
Q  196 tacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtc 295  Q
    ||||||||||| |||||| |||  |||||||||  ||||||||| || |||||||||| ||| |||||| |||| | |||  |||| ||||||| ||| |    
T  13705779 tacccgattctcatatacttatccgttaccctacccatatccaacggggatgagaaattgaatctcatccccgttcccgatagatttgggtatccccgcc 13705680  T
Q  296 tcatccccgtccctgcattgaataatttttt 326  Q
    |||||||| |||| |||||||||||||||||    
T  13705679 tcatccccatccccgcattgaataatttttt 13705649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 37999136 - 37999301
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||||||| ||| ||||||| |||||  ||   |||||||||  | ||||||| || |||||||||| ||| |||||| |||||  |||    
T  37999136 ttttaccttccccgtccccatactcgattctcatataattacccgttaccctacccgtatccaacggggatgagaaattgaatctcatccccgtctccga 37999235  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| ||| | ||||||||| || ||||||||||||||||  || |||||||||||||    
T  37999236 cgggttcgggtatccccgccccatccccgttcccgcattgaataattttt--taataaaaaatagaag 37999301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 326
Target Start/End: Original strand, 45256474 - 45256625
Alignment:
Q  175 attttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacg 274  Q
    |||||||||||||||||||| || || ||||| |||||  |||  |||||||||   ||||| || || |||||||||| ||| |||||| |||||| ||    
T  45256474 attttacattctccgtccccatatccaattctcatatatttatccgttaccctacctatatctaacggggatgagaaattgaatctcatccccgtccccg 45256573  T
Q  275 acggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    | || || ||||||| ||  | |||||||||||| |||||||||||||||||    
T  45256574 atgggtttgggtatccccaccccatccccgtccccgcattgaataatttttt 45256625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 16227127 - 16227039
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatc 264  Q
    |||||||||| |||||||| ||||||||||| |||||| || ||||||||||| ||||| |||| || ||||| |||| ||||||||||    
T  16227127 ttttacattccccgtccccatacccgattctcatatacttacatgttaccctactcatacccaacggggatgaaaaattgaacctcatc 16227039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 35336292 - 35336381
Alignment:
Q  200 cgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    ||||||| |||||| || |||||||||||  ||||||||||||||||||||||| ||| |||||| ||| || | ||||||| |||||||    
T  35336292 cgattctcatatacttacatgttaccctacccatatccaatggagatgagaaattgaatctcatccccgcccccaacggatttgggtatc 35336381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 343
Target Start/End: Original strand, 37319596 - 37319760
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||||||| |||||||| ||||||||||| |||||| ||| |||||| |     |||  |||||| |||||||||| ||||| |||| | |||| |||    
T  37319596 ttttacattccccgtccccatacccgattctcatatacttatctgttactcgt---atactcaatggggatgagaaattgaaccccatccctgtcctcga 37319692  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||| |||||||||| ||  | ||||||| ||||  |||||||||||||||| || || ||||| ||||    
T  37319693 cgggttcgggtatccccaccccatccccctccccacattgaataattttttttaatataaaattgaag 37319760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 343
Target Start/End: Complemental strand, 8916305 - 8916208
Alignment:
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| |||||| |||||| |||||| |||||||||| |||   |||||| ||||||||||||||||  ||||| || |||||||||||||    
T  8916305 gatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccgctccatccctgtccctgcattgaata--tttttttaataaaaaatagaag 8916208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 7315119 - 7314924
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| ||   |||||| ||| |||||||| ||||||||||| |||||| ||   ||||||||   ||||||||  ||     
T  7315119 taggcatggcaatggggcggggtggggacgggttttaccttccccgtccccatacccgattctcatatacttacccgttaccctgcccatatccagcggg 7315020  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaata 339  Q
    |||||||||| ||| | |||| |||||| |||||| |||||||||| ||  | ||| ||| |||| | || |||||||| ||| || |||||||||    
T  7315019 gatgagaaattgaatcacatccccgtccccgacgggttcgggtatccccaccccattcccatccccgtatcgaataattgtttttaataaaaaata 7314924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 326
Target Start/End: Original strand, 45115303 - 45115382
Alignment:
Q  247 gagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    ||||||| ||| |||||| || ||| |||||| |||||||||| ||| ||||||||| |||| |||||||||||||||||    
T  45115303 gagaaattgaatctcatccccatccccgacgggttcgggtatccccgcctcatccccatccccgcattgaataatttttt 45115382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 18106505 - 18106395
Alignment:
Q  187 ccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggt 286  Q
    |||||||| |||||||||||  ||||| ||  ||||||||||  ||||||||| || |||||||| |  || |||||| |||||  ||||||||||||||    
T  18106505 ccgtccccatacccgattctcgtatacttacctgttaccctacccatatccaacggggatgagaagttaaatctcatccccgtctccgacggattcgggt 18106406  T
Q  287 atctccgtctc 297  Q
    ||| |||||||    
T  18106405 atccccgtctc 18106395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 343
Target Start/End: Complemental strand, 42798401 - 42798260
Alignment:
Q  201 gattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatc 300  Q
    |||||| |||||| ||| ||||||||||  |||| |||| || ||||| |||| ||| | |||| |||| |  ||||| ||||||||||  || | ||||    
T  42798401 gattctcatatacttatctgttaccctacacatacccaacggggatgataaattgaatcacatccccgttcctgacgggttcgggtatccacgccccatc 42798302  T
Q  301 cccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    ||||||||  |||||||||||||||| || |||||||||||||    
T  42798301 cccgtccccacattgaataatttttt-taataaaaaatagaag 42798260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 10920420 - 10920463
Alignment:
Q  299 tccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  10920420 tccccgtccctgcattgaataatttttt-tattaaaaaatagaag 10920463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 295
Target Start/End: Original strand, 9632049 - 9632168
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| |||| ||| ||||||||||| |||||| ||   |||||||||  |||| |||| || |||||||||| ||| |||||| |||||| | |    
T  9632049 ttttaccttccccgttcccatacccgattcttatatacttacccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtccccaa 9632148  T
Q  276 cggattcgggtatctccgtc 295  Q
    ||| |||||||||| |||||    
T  9632149 cgggttcgggtatccccgtc 9632168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 31942624 - 31942515
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| || |||||||| ||   |||||||||| |||||||| ||||||||| | |||||| ||   |||||||||  |||| |||| ||     
T  31942624 taggcatgacaatggggcggggtggggacgggttttacattccccgtccccatacccgattatcatatacttacccgttaccctacccatacccaacggg 31942525  T
Q  244 gatgagaaat 253  Q
    ||||||||||    
T  31942524 gatgagaaat 31942515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 31942499 - 31942457
Alignment:
Q  299 tccccgtccctgcattgaataattttttatattaaaaaataga 341  Q
    |||||||||| ||||||||||||||||| || |||||||||||    
T  31942499 tccccgtccccgcattgaataattttttttaataaaaaataga 31942457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 4427611 - 4427688
Alignment:
Q  231 catatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccc 308  Q
    |||||||||||| |||||||||| ||| | |||| |||||| | | || ||||||||| || | ||||||||||||||    
T  4427611 catatccaatggggatgagaaattgaatcacatccccgtccccaatgggttcgggtatttcagcctcatccccgtccc 4427688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 15546345 - 15546454
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    |||||| ||| || ||||| ||||| ||||| |||||| ||   |||||||||   ||||||||||| |||||||||| ||||| | || |||||| |||    
T  15546345 ttttaccttccccatccccataccctattctcatatacttacccgttaccctacctatatccaatggggatgagaaattgaaccccttccccgtccccga 15546444  T
Q  276 cggattcggg 285  Q
    ||| ||||||    
T  15546445 cgggttcggg 15546454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 35248833 - 35248776
Alignment:
Q  221 ttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacgg 278  Q
    ||||||||  ||||||||| || ||| |||||||||| ||||||||||||| ||||||    
T  35248833 ttaccctacccatatccaacggggataagaaatcgaatctcatctccgtccccgacgg 35248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 144 - 326
Target Start/End: Original strand, 33014 - 33196
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| || |||||||| |||  |||||||||| |||||||| |||| |||||| |||||| ||   |||||||||  |||| |||| ||     
T  33014 taggcatggcaatggggcggggtggggacaggttttacattccccgtccccatacctgattctcatatacttacccgttaccctacccatacccaacggg 33113  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
     ||||||||| ||| |||||| |||||| ||||||||||||||||| ||  | ||||||| |||| |||||||||||||||||    
T  33114 aatgagaaattgaatctcatccccgtccccgacggattcgggtatccccaccacatccccatccccgcattgaataatttttt 33196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 3877 - 4075
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| ||  ||||||| ||  ||||||| |||||||||||| ||||||||||| |||||  ||  | ||||||||  |||| |||| ||     
T  3877 taggcatggcaatggggccgggtggggacggattttaccttctccgtccccatacccgattctcatatatttacttattaccctacccatacccaacggg 3976  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||| | |||| |||||| ||| || |||||||| | ||| | |||||||||||| ||||||||||||||||| || | |||||||||||    
T  3977 gatgagaaattgaatcacatccccgtccccgatgggttcgggtacccccgccccatccccgtccccgcattgaataatttttt-taatgaaaaatagaag 4075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 326
Target Start/End: Original strand, 33289 - 33384
Alignment:
Q  231 catatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    ||||||||| || |||||||||| ||||||||||||||||| |||||| |||||||||| |||   ||||||||||||||||||||||| ||||||    
T  33289 catatccaacggggatgagaaattgaacctcatctccgtccccgacgggttcgggtatccccgctccatccccgtccctgcattgaatagtttttt 33384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1630 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold1630
Description:

Target: scaffold1630; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 143 - 343
Target Start/End: Original strand, 1241 - 1438
Alignment:
Q  143 ataggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgg 242  Q
    ||||||||| ||||  ||||||||||| ||   |||||| ||| |||||||| |  | |||||| |||||| ||| ||||||||||| |||| | || ||    
T  1241 ataggcatggcaattgggtggggtggggacgggttttaccttccccgtccccatgtctgattctcatatacttatctgttaccctatccatacctaacgg 1340  T
Q  243 agatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaa 342  Q
     |||||||||| ||| ||||||||| ||| |||||| |||||  ||| |||  | ||||||||||| ||||||||||||||||| || ||||||||||||    
T  1341 ggatgagaaattgaatctcatctccatccccgacgggttcgg--atccccgcttaatccccgtccccgcattgaataatttttt-taataaaaaatagaa 1437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 144 - 336
Target Start/End: Original strand, 9921 - 10113
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| ||||||||||| ||   |||||| ||| ||||| || |||   ||||| |||||| |||  |||||||||| ||||  ||| ||     
T  9921 taggcatgacaatggggtggggtggggacgtgttttaccttccccgtctccatacataattctcatatacttatccgttaccctatccatactcaacggg 10020  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaa 336  Q
    |||||||||| ||| |||||| |||||| |||||| |||||||||| || || ||||||| |||  ||||  |||||||||||  ||||||||    
T  10021 gatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccatcccatccccatccacgcatcaaataatttttttaattaaaaa 10113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 326
Target Start/End: Original strand, 35805 - 35955
Alignment:
Q  176 ttttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacga 275  Q
    ||||| |||| |||||||| ||||||||||  |||||| |    ||||||||| |||||||||| || |||||||||| ||||| |||| |||| | |||    
T  35805 ttttatattccccgtccccatacccgattcacatatacttgcccgttaccctactcatatccaacggggatgagaaattgaaccacatccccgttcccga 35904  T
Q  276 cggattcgggtatctccgtctcatccccgtccctgcattgaataatttttt 326  Q
    ||| |||||||||  |||  ||||| || |||| |||||||||||||||||    
T  35905 cgggttcgggtattcccgcttcatctccatccccgcattgaataatttttt 35955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 343
Target Start/End: Complemental strand, 32989 - 32800
Alignment:
Q  148 catgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatggagatg 247  Q
    ||||| |||| || |||||||| || | |||||| |||||||||||| |||| |||||| |||||| ||   |||||||||  |||| | ||||  ||||    
T  32989 catgataatggggcggggtggggacgagttttaccttctccgtccccatacctgattctcatatacttacccgttaccctacccatacctaatgaggatg 32890  T
Q  248 agaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||| ||| |||||| |||||| |||||| |||||||||| ||  | |||||||||      || |||||||||||| || |||||||||||||    
T  32889 agaaattgaatctcatccccgtccccgacgggttcgggtatccccaccccatccccgt------atcgaataattttttttaataaaaaatagaag 32800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 343
Target Start/End: Original strand, 14396 - 14594
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||||||||| |||  ||| || ||  |||||||||||  ||||||| ||| | ||||| |||||| ||  ||||||||||  ||||| ||| ||     
T  14396 taggcatgacaatggggtaaggttgggacggattttacattcctcgtccccatactcaattctcatatacttacttgttaccctacccatattcaacggg 14495  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccccgtccctgcattgaataattttttatattaaaaaatagaag 343  Q
    |||||||||| ||||| ||||||| ||| ||| || || | ||||| |   | |||||||||||| |||| |||||||||||| || |||||||||||||    
T  14496 gatgagaaattgaaccccatctccatcctcgatgggtttgagtatccctaccccatccccgtccccgcatcgaataatttttt-taataaaaaatagaag 14594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 289
Target Start/End: Original strand, 90216 - 90361
Alignment:
Q  144 taggcatgacaatgaggtggggtgggtacaaattttacattctccgtccccgtacccgattctgatatacatatatgttaccctattcatatccaatgga 243  Q
    |||||||| ||||| |||||| |||| ||   ||||||||||||||||  | |||| |||||| |||||| ||   |||||||||| |||| ||||  |     
T  90216 taggcatggcaatggggtgggatggggacgggttttacattctccgtcagcatacctgattctcatatacttacccgttaccctatccatacccaacagg 90315  T
Q  244 gatgagaaatcgaacctcatctccgtccacgacggattcgggtatc 289  Q
    |||||||||| |||||||||| |||||| |||||| || |||||||    
T  90316 gatgagaaattgaacctcatccccgtccccgacgggtttgggtatc 90361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 5036 - 4954
Alignment:
Q  220 gttaccctattcatatccaatggagatgagaaatcgaacctcatctccgtccacgacggattcgggtatctccgtctcatccc 302  Q
    ||||||||| ||||| | || || ||||||| ||||||  ||||||| |||| ||||||||||||||||| ||||| ||||||    
T  5036 gttaccctactcatacctaacggggatgagagatcgaaattcatctcagtccccgacggattcgggtatccccgtcccatccc 4954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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