View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19008_low_3 (Length: 281)
Name: NF19008_low_3
Description: NF19008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19008_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 135 - 271
Target Start/End: Original strand, 4015586 - 4015722
Alignment:
| Q |
135 |
gaaggaatggttttggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgtgttcttc |
234 |
Q |
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| T |
4015586 |
gaaggaatggttttggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgtgttcttc |
4015685 |
T |
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| Q |
235 |
gtgattattgttaagagcgaagggtttcgtgtctgtg |
271 |
Q |
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| T |
4015686 |
gtgattatttttaagagcgaagagtttcgtgtctgtg |
4015722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 4015434 - 4015520
Alignment:
| Q |
43 |
ttccaaacacagagccagtactcaaaaccataaacagttttagaaacaacttccaaaagaagcaatccattacaggaatcaactatc |
129 |
Q |
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| T |
4015434 |
ttccaaacacagagccagtactcaaaaccataaacagtttcagaaacaacttccaaaagaagcaatccattacaggaatcaactatc |
4015520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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