View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19008_low_5 (Length: 254)
Name: NF19008_low_5
Description: NF19008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19008_low_5 |
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| [»] scaffold0288 (3 HSPs) |
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Alignment Details
Target: scaffold0288 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 14598 - 14709
Alignment:
| Q |
13 |
aatatcaaaccaaaatccatccccgcgaccaccattcagtcgtcactgcgtctcatttgatgtcggcgaccacctgcagccgcgagcccactaccacaag |
112 |
Q |
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| T |
14598 |
aatatcaaaccaaaatccatccccgtgaccaccattcagtcgtcactgcatctcatttgatgtcggcgaccacctgcagccgcgaacccactaccacaag |
14697 |
T |
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| Q |
113 |
gttggtcatgta |
124 |
Q |
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| T |
14698 |
gttggtcatgta |
14709 |
T |
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Target: scaffold0288; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 14774 - 14814
Alignment:
| Q |
195 |
ctttcttctaaccctgttactgtaaaagaggtaatacctag |
235 |
Q |
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| T |
14774 |
ctttcttctacccctgtaactgtaaaagaggtaatacctag |
14814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 14723 - 14758
Alignment:
| Q |
148 |
cacacatatatatttttgacttatttccagtctcta |
183 |
Q |
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| T |
14723 |
cacacatatatatttttgacttatttccattctcta |
14758 |
T |
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