View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19008_low_7 (Length: 216)
Name: NF19008_low_7
Description: NF19008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19008_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 27848302 - 27848105
Alignment:
| Q |
1 |
cgagaaacaccatatccatcacctccttcgcctggtccggcatatccatatcctccacctacatccccaacaatgagttttctggcagcagaacttatgc |
100 |
Q |
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| T |
27848302 |
cgagaaacaccatatccatcacctccttcgcctggtccggcatatccatatcctccacctacatccccaacaatgagttttctggcagcagaacttatgc |
27848203 |
T |
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| Q |
101 |
ttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccatttgtaaaattgttgaaatcctacacaactgaggtttaagaattcat |
198 |
Q |
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| T |
27848202 |
ttaagcccaacaacacaaagagaacgatactaagaactttcgaagttgccatttgtaaaattgttgaaatcctacacaactgaggtttaagaattcat |
27848105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 27858062 - 27857985
Alignment:
| Q |
75 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
152 |
Q |
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| T |
27858062 |
gagttttctagtagcagaacacatgcttaaacccaacaacacaaagagagaaatgcttagaactttcgaagttgccat |
27857985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 27872105 - 27871996
Alignment:
| Q |
75 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccatttgtaaaattgttgaaatccta |
174 |
Q |
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| T |
27872105 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagatagcaatgcttagaactttcgaagttgccatatgaaattttgtttgaatctta |
27872006 |
T |
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| Q |
175 |
cacaactgag |
184 |
Q |
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| T |
27872005 |
cacaactgag |
27871996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 27884342 - 27884265
Alignment:
| Q |
75 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
152 |
Q |
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| T |
27884342 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
27884265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 27885622 - 27885545
Alignment:
| Q |
75 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
152 |
Q |
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| T |
27885622 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
27885545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 27967535 - 27967458
Alignment:
| Q |
75 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
152 |
Q |
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| T |
27967535 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
27967458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 27979598 - 27979521
Alignment:
| Q |
75 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
152 |
Q |
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| T |
27979598 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
27979521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 28024521 - 28024444
Alignment:
| Q |
75 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
152 |
Q |
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| T |
28024521 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
28024444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 28036867 - 28036790
Alignment:
| Q |
75 |
gagttttctggcagcagaacttatgcttaagcccaacaacacaaagagaacgatactgagaactttcgaagttgccat |
152 |
Q |
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| T |
28036867 |
gagttttctagtagcagaacacatgcttaaacccaacagcacaaagagagcaatgcttagaacttttgaagttgccat |
28036790 |
T |
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