View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_high_11 (Length: 501)

Name: NF19009_high_11
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_high_11
NF19009_high_11
[»] chr4 (2 HSPs)
chr4 (1-484)||(9277952-9278435)
chr4 (196-476)||(1643858-1644140)
[»] chr6 (5 HSPs)
chr6 (48-425)||(26621211-26621588)
chr6 (48-425)||(26727190-26727567)
chr6 (230-331)||(8095385-8095485)
chr6 (227-269)||(14325743-14325785)
chr6 (227-269)||(14418753-14418795)
[»] chr7 (1 HSPs)
chr7 (4-224)||(22268457-22268675)
[»] chr2 (2 HSPs)
chr2 (209-467)||(37178571-37178831)
chr2 (232-290)||(20523193-20523251)
[»] chr3 (3 HSPs)
chr3 (86-221)||(15832312-15832451)
chr3 (395-473)||(20605619-20605697)
chr3 (228-308)||(4674659-4674739)
[»] scaffold0102 (2 HSPs)
scaffold0102 (227-308)||(2265-2346)
scaffold0102 (227-270)||(6656-6699)
[»] chr1 (3 HSPs)
chr1 (227-270)||(23415327-23415370)
chr1 (236-326)||(23700684-23700774)
chr1 (235-287)||(15730794-15730846)
[»] chr5 (1 HSPs)
chr5 (420-476)||(9281502-9281558)
[»] chr8 (1 HSPs)
chr8 (193-225)||(11773447-11773479)


Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 9277952 - 9278435
Alignment:
Q  1 aacatggagaaaatcaattatgatgcattgtgttcacaattgtacaggataagtgcttatatacaatctggaaatgtcagctcatatagtaactacctca 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9277952 aacatggagaaaatcaattatgatgcattgagttcacaattgtacaggataagtgcttatatacaatctggaaatgtcagctcatatagtaactacctca 9278051  T
Q  101 actaactaaatgaaagtgaaatgcaaatgaaattacaagtaaactcaaatttagttagaaagtaacttgcgcgccaagctaggtttttcttgttatttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9278052 actaactaaatgaaagtgaaatgcaaatgaaattacaagtaaactcaaatttagttagaaagtaacttgcgcgccaagctaggtttttcttgttatttca 9278151  T
Q  201 tcctctttttcttcatatgctaataaccccacaagctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaattgcctaggtcct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9278152 tcctctttttcttcatatgctaataaccccacaagctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaattgcctaggtcct 9278251  T
Q  301 gctgctttggtaaagacatcagctgtctgatgttacgaggtgatagggagcaaatgcatgactcgagcctgaattttctcacgcaccaagtggtaatcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9278252 gctgctttggtaaagacatcagctgtctgatgttacgaggtgatagggagcaaatgcatgactcgagcctgaattttctcacgcaccaagtggtaatcaa 9278351  T
Q  401 tgtataggtgtttggtacgctcatggaaaactggattagaagaaatatgcaaagcactttggttgtcacaatagagtgcacact 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9278352 tgtataggtgtttggtacgctcatggaaaactggattagaagaaatatgcaaagcactttggttgtcacaatagagtgcacact 9278435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 196 - 476
Target Start/End: Complemental strand, 1644140 - 1643858
Alignment:
Q  196 tttcatcctctttttcttcatatgctaataaccccac--aagctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaattgcct 293  Q
    |||||||| ||||| |||||| |||| ||| |||| |  |||||||||||||||||||| ||||||||||||||||||  || ||| |||||||||| ||    
T  1644140 tttcatccacttttccttcatgtgctgataccccctcgcaagctggaggttggtagatatctaccatcccaagcttgagcatacaagcatgaaattgtct 1644041  T
Q  294 aggtcctgctgctttggtaaagacatcagctgtctgatgttacgaggtgatagggagcaaatgcatgactcgagcctgaattttctcacgcaccaagtgg 393  Q
    |||||||||||| ||||| |||| ||| ||||| ||||  |  |||||||  || |||||| |||| || | ||||||||| |||||||| ||||| ||     
T  1644040 aggtcctgctgccttggtgaagatatctgctgtttgattgtgagaggtgacgggaagcaaacgcatcacaccagcctgaatcttctcacgtaccaaatga 1643941  T
Q  394 taatcaatgtataggtgtttggtacgctcatggaaaactggattagaagaaatatgcaaagcactttggttgtcacaatagag 476  Q
     | |||||||  | ||||||||| || |||||||| || ||||| | ||||||||| | |||||| ||||| || ||||||||    
T  1643940 cagtcaatgtccaagtgtttggtgcgttcatggaagacaggattcgcagaaatatgtagagcactctggttatcgcaatagag 1643858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 48 - 425
Target Start/End: Complemental strand, 26621588 - 26621211
Alignment:
Q  48 gataagtgcttatatacaatctggaaatgtcagctcatatagtaactacctcaactaactaaatgaaagtgaaatgcaaatgaaattacaagtaaactca 147  Q
    |||||||||||||||||| ||||| |||||||| ||| |   ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  26621588 gataagtgcttatatacagtctggtaatgtcagttcacaa--taactaccttaactaactaaatgaaagtgaaatgcaaatgaaattacaagtaaattca 26621491  T
Q  148 aatttagttagaaagtaacttgcgcgccaagctaggtttttcttgttatttcatcctctttttcttcatatgctaataaccccac--aagctggaggttg 245  Q
    ||||||||||| | |||||||||||||||||||||| || | |||||||||| | |||||||||||  ||||||||||||||| |  |||||||||||||    
T  26621490 aatttagttagtaggtaacttgcgcgccaagctaggattcttttgttatttctttctctttttcttggtatgctaataacccctcgcaagctggaggttg 26621391  T
Q  246 gtagatacctaccatcccaagcttgacaattcaatcatgaaattgcctaggtcctgctgctttggtaaagacatcagctgtctgatgttacgaggtgata 345  Q
    |||| || |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||  ||||||||     
T  26621390 gtagttatctaccatcccaagcttgacaatgcaatcatgaaattgcctaggtccttctgctttggtaaaaacatcagttgtctggtgttgagaggtgatg 26621291  T
Q  346 gggagcaaatgcatgactcgagcctgaattttctcacgcaccaagtggtaatcaatgtataggtgtttggtacgctcatg 425  Q
    ||||||||| ||||||||| ||||||||| ||||||||||| |||| | | ||||||| ||||||||||||| |||||||    
T  26621290 gggagcaaacgcatgactccagcctgaatcttctcacgcactaagttggagtcaatgtctaggtgtttggtatgctcatg 26621211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 48 - 425
Target Start/End: Complemental strand, 26727567 - 26727190
Alignment:
Q  48 gataagtgcttatatacaatctggaaatgtcagctcatatagtaactacctcaactaactaaatgaaagtgaaatgcaaatgaaattacaagtaaactca 147  Q
    |||||||||||||||||| ||||| |||||||| ||| |   ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  26727567 gataagtgcttatatacagtctggtaatgtcagttcacaa--taactaccttaactaactaaatgaaagtgaaatgcaaatgaaattacaagtaaattca 26727470  T
Q  148 aatttagttagaaagtaacttgcgcgccaagctaggtttttcttgttatttcatcctctttttcttcatatgctaataaccccac--aagctggaggttg 245  Q
    ||||||||||| | |||||||||||||||||||||| || | |||||||||| | |||||||||||  ||||||||||||||| |  |||||||||||||    
T  26727469 aatttagttagtaggtaacttgcgcgccaagctaggattcttttgttatttctttctctttttcttggtatgctaataacccctcgcaagctggaggttg 26727370  T
Q  246 gtagatacctaccatcccaagcttgacaattcaatcatgaaattgcctaggtcctgctgctttggtaaagacatcagctgtctgatgttacgaggtgata 345  Q
    |||| || |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||  ||||||||     
T  26727369 gtagttatctaccatcccaagcttgacaatgcaatcatgaaattgcctaggtccttctgctttggtaaaaacatcagttgtctggtgttgagaggtgatg 26727270  T
Q  346 gggagcaaatgcatgactcgagcctgaattttctcacgcaccaagtggtaatcaatgtataggtgtttggtacgctcatg 425  Q
    ||||||||| ||||||||| ||||||||| ||||||||||| |||| | | ||||||| ||||||||||||| |||||||    
T  26727269 gggagcaaacgcatgactccagcctgaatcttctcacgcactaagttggagtcaatgtctaggtgtttggtatgctcatg 26727190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 230 - 331
Target Start/End: Original strand, 8095385 - 8095485
Alignment:
Q  230 cacaagctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaattgcctaggtcctgctgctttggtaaagacatcagctgtctg 329  Q
    ||||||||||||||||||||||  || ||||||||||||||||||| ||||| |||||||| || |||  |||||| ||||| || ||||||||||| ||    
T  8095385 cacaagctggaggttggtagatgtcttccatcccaagcttgacaatgcaatcgtgaaattgtcttggttttgctgc-ttggtgaaaacatcagctgtttg 8095483  T
Q  330 at 331  Q
    ||    
T  8095484 at 8095485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 14325785 - 14325743
Alignment:
Q  227 ccccacaagctggaggttggtagatacctaccatcccaagctt 269  Q
    ||||||||||| |||||||||||||| |||||||||| |||||    
T  14325785 ccccacaagctagaggttggtagatatctaccatccctagctt 14325743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 14418795 - 14418753
Alignment:
Q  227 ccccacaagctggaggttggtagatacctaccatcccaagctt 269  Q
    ||||||||||| |||||||||||||| |||||||||| |||||    
T  14418795 ccccacaagctagaggttggtagatatctaccatccctagctt 14418753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 22268675 - 22268457
Alignment:
Q  4 atggagaaaatcaattatgatgcattgtgttcacaattgtacaggataagtgcttatatacaatctggaaatgtcagctcatatagtaactacctcaact 103  Q
    |||||||||| |||||||||| ||||   ||  |||||||||| |||||||||||||||||| ||| |||||| |||||||||  ||||||| || ||||    
T  22268675 atggagaaaaccaattatgattcattagcttt-caattgtacatgataagtgcttatatacagtctagaaatgccagctcata--gtaactatcttaact 22268579  T
Q  104 aactaaatgaaagtgaaatgcaaatgaaattacaagtaaactcaaatttagttag-aaagtaacttgcgcgccaagctaggtttttcttgttatttcatc 202  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||| | |||||    ||||||||| |||||||||||||||| ||| ||||||| ||    
T  22268578 aactaaatgaaagtgaaatgtaaatgaaattacatgtaaattcaaatgttgttagttgggtaacttgcacgccaagctaggttttgcttattatttcttc 22268479  T
Q  203 ctctttttcttcatatgctaat 224  Q
    ||| |||| |||||||||||||    
T  22268478 ctccttttattcatatgctaat 22268457  T

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Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 209 - 467
Target Start/End: Complemental strand, 37178831 - 37178571
Alignment:
Q  209 ttcttcatatgctaataaccccac--aagctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaattgcctaggtcctgctgct 306  Q
    ||||| ||||||||||| |||| |  || |||| |||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| || |  ||     
T  37178831 ttctttatatgctaataccccctctcaaactggtggttggtagatatctaccatcccaagtttgacaatacaatcatgaaattgcctaggaccagaagcc 37178732  T
Q  307 ttggtaaagacatcagctgtctgatgttacgaggtgatagggagcaaatgcatgactcgagcctgaattttctcacgcaccaagtggtaatcaatgtata 406  Q
    ||||| || ||||| |||||||||||||  || ||||| || || ||| |||||||||  || ||||| |||||||| || || ||| | ||||| |  |    
T  37178731 ttggtgaaaacatctgctgtctgatgttgagaagtgatgggtagtaaacgcatgactcctgcttgaatcttctcacgaactaaatggcagtcaatatcca 37178632  T
Q  407 ggtgtttggtacgctcatggaaaactggattagaagaaatatgcaaagcactttggttgtc 467  Q
    | ||||||||||| ||||| || || ||||| | ||| || || ||||||||||| |||||    
T  37178631 gatgtttggtacgttcatgaaagaccggattggcagatatgtgtaaagcactttgattgtc 37178571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 20523251 - 20523193
Alignment:
Q  232 caagctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaattg 290  Q
    ||||||||||||||||||||| |||||||||||||||||   || || |||||||||||    
T  20523251 caagctggaggttggtagatatctaccatcccaagcttggagatacattcatgaaattg 20523193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 15832451 - 15832312
Alignment:
Q  86 atagtaactacctcaactaactaaatgaaagtgaaatgcaaatga-aattacaagtaaactcaaatttagttag-aaagtaacttgcgcgccaagctagg 183  Q
    ||||||||||||  |||||||||||||||||||||||| |||| | ||||||||||||| ||||| | || |||  ||||||||||||||||||||||||    
T  15832451 atagtaactaccctaactaactaaatgaaagtgaaatgtaaattataattacaagtaaattcaaa-tgagctagttaagtaacttgcgcgccaagctagg 15832353  T
Q  184 ---tttttcttgttatttcatcctctttttcttcatatgct 221  Q
       ||| |||| || |||| |||||||||||||||||||||    
T  15832352 gtttttctcttattgtttcttcctctttttcttcatatgct 15832312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 473
Target Start/End: Complemental strand, 20605697 - 20605619
Alignment:
Q  395 aatcaatgtataggtgtttggtacgctcatggaaaactggattagaagaaatatgcaaagcactttggttgtcacaata 473  Q
    ||||||| | ||| ||||||||||||||||| || || |||||||  |||||||||||||||||||  |||||||||||    
T  20605697 aatcaatatctagatgtttggtacgctcatgaaacacaggattagctgaaatatgcaaagcactttaattgtcacaata 20605619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 4674659 - 4674739
Alignment:
Q  228 cccacaagctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaattgcctaggtcctgctgcttt 308  Q
    ||||||||||||||||||||||||| | |||||||||||||||   || || ||||  |||||||| || |||||||||||    
T  4674659 cccacaagctggaggttggtagatatccaccatcccaagcttggtgatgcattcatagaattgccttggccctgctgcttt 4674739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 2346 - 2265
Alignment:
Q  227 ccccacaagctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaattgcctaggtcctgctgcttt 308  Q
    |||||||||||||||||||||||||| |||||||||||||||||   || || ||||  |||||||| || |||||||||||    
T  2346 ccccacaagctggaggttggtagatatctaccatcccaagcttggtgatgcattcatagaattgccttggccctgctgcttt 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 6699 - 6656
Alignment:
Q  227 ccccacaagctggaggttggtagatacctaccatcccaagcttg 270  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  6699 ccccacaagctggaggttggtagatatctaccatcccaagcttg 6656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 23415327 - 23415370
Alignment:
Q  227 ccccacaagctggaggttggtagatacctaccatcccaagcttg 270  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  23415327 ccccacaagctggaggttggtagatatctaccatcccaagcttg 23415370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 23700684 - 23700774
Alignment:
Q  236 ctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaattgcctaggtcctgctgctttggtaaagacatcagctgt 326  Q
    ||||||||||||||||| || |||||||  |||||   || || ||||||||||| | |||||| |||||||| ||||| ||||| |||||    
T  23700684 ctggaggttggtagatatctgccatcccttgcttggtgatgcattcatgaaattgacaaggtccagctgcttttgtaaacacatctgctgt 23700774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 15730794 - 15730846
Alignment:
Q  235 gctggaggttggtagatacctaccatcccaagcttgacaattcaatcatgaaa 287  Q
    ||||||||||||||| |  ||| |||||||||||||||||| | |||||||||    
T  15730794 gctggaggttggtagctgtctagcatcccaagcttgacaatgcgatcatgaaa 15730846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 476
Target Start/End: Complemental strand, 9281558 - 9281502
Alignment:
Q  420 ctcatggaaaactggattagaagaaatatgcaaagcactttggttgtcacaatagag 476  Q
    |||||| ||||| |||||||||| |||||| | ||||||||| ||||||||||||||    
T  9281558 ctcatgaaaaacaggattagaagcaatatgtatagcactttgattgtcacaatagag 9281502  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 11773479 - 11773447
Alignment:
Q  193 ttatttcatcctctttttcttcatatgctaata 225  Q
    ||||||||||||||||||||||| |||||||||    
T  11773479 ttatttcatcctctttttcttcacatgctaata 11773447  T

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