View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_high_13 (Length: 480)
Name: NF19009_high_13
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 461
Target Start/End: Original strand, 1963502 - 1963952
Alignment:
| Q |
11 |
cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat |
110 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| ||| |||| ||||||||||||||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
1963502 |
cacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgtggtgtatggtgtgccactaat |
1963601 |
T |
|
| Q |
111 |
cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtg |
210 |
Q |
| |
|
||| |||||||| | ||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963602 |
cacttggcctctgtatgctgagcagagaacaaatgcagttttgctctgtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtg |
1963701 |
T |
|
| Q |
211 |
gaaagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963702 |
gaaagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagta |
1963801 |
T |
|
| Q |
311 |
gtgtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963802 |
gtgtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgt |
1963901 |
T |
|
| Q |
411 |
attattaagatcaccttatttggcctaatatttcacagtttacgtatcttc |
461 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1963902 |
attattaagatcaccttatttggccttatatttcacagtttacgtatcttc |
1963952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 2018310 - 2017907
Alignment:
| Q |
11 |
cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018310 |
cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat |
2018211 |
T |
|
| Q |
111 |
cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
2018210 |
cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtg |
2018111 |
T |
|
| Q |
211 |
gaaagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagta |
310 |
Q |
| |
|
|||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||| || |
|
|
| T |
2018110 |
gaaaaggtacaaattgcagagttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaata |
2018011 |
T |
|
| Q |
311 |
gtgtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgt |
410 |
Q |
| |
|
||| ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2018010 |
gtgcacataaagatgatggatcttttacaaagacactttctcaattagcactcaagtggag-aaatttggtatagaaaaacaagttgtatgacaatatgt |
2017912 |
T |
|
| Q |
411 |
attat |
415 |
Q |
| |
|
||||| |
|
|
| T |
2017911 |
attat |
2017907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 423
Target Start/End: Complemental strand, 2014927 - 2014515
Alignment:
| Q |
11 |
cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2014927 |
cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaatgcttgagagtgtgttgcatggtgtgccactaat |
2014828 |
T |
|
| Q |
111 |
cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
2014827 |
cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaattaatcagaatggcattgtg |
2014728 |
T |
|
| Q |
211 |
gaaagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagta |
310 |
Q |
| |
|
|||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||| || |
|
|
| T |
2014727 |
gaaaaggtacaaattgcagagttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaattaaaagaatctgctaata |
2014628 |
T |
|
| Q |
311 |
gtgtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaacaagttttatgacaatatgt |
410 |
Q |
| |
|
||| ||||||||| || || ||| |||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
2014627 |
gtgcacataaagatgacgggtctgctacaaagactctttctcaattagttcttaagtggagaaactttggtattgaaaaacaagtttaatgacaatatgc |
2014528 |
T |
|
| Q |
411 |
attattaagatca |
423 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
2014527 |
aatattaagatca |
2014515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 2004525 - 2004167
Alignment:
| Q |
13 |
cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca |
112 |
Q |
| |
|
|||||||||||||| |||||| ||||| || |||||||||||||| ||||| ||||||||||| || ||||||||| ||||||||||||||||||| | |
|
|
| T |
2004525 |
cagattcaaatcctaagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaataa |
2004426 |
T |
|
| Q |
113 |
catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtgga |
212 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||||| |||| ||||| || |||||||| ||||| |
|
|
| T |
2004425 |
catggcctctatttgctgagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggattgagggcaagtgttaatgaaaatggcatagtgga |
2004326 |
T |
|
| Q |
213 |
aagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagt |
312 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||| |||| ||||| ||||||||||| |||||| ||||| | | |
|
|
| T |
2004325 |
aagggtagaggttgctaaggtgatcaagtgtctcatggaaggggaagaaggtgagaaattgcgcaataacatgaaggaattaaaagaatctgcttcgaat |
2004226 |
T |
|
| Q |
313 |
gtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggag |
371 |
Q |
| |
|
| ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2004225 |
gctgtcaaagaagatggttcttctacaaacactatttctcaattagcactcaagtggag |
2004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 1969116 - 1969474
Alignment:
| Q |
13 |
cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca |
112 |
Q |
| |
|
|||||||||||||| |||||| ||| ||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1969116 |
cagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatca |
1969215 |
T |
|
| Q |
113 |
catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtgga |
212 |
Q |
| |
|
|||||||| | ||||||||||||| || |||||| |||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
1969216 |
catggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagttaatgaaaacggcattgtgga |
1969315 |
T |
|
| Q |
213 |
aagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagt |
312 |
Q |
| |
|
||| | ||| ||| | || |||||||| ||||||||||||| |||||||||| ||| |||| ||||| ||||||||||| |||||||||||| | | |
|
|
| T |
1969316 |
aagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaattaaaagaagctgcttcaaat |
1969415 |
T |
|
| Q |
313 |
gtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggag |
371 |
Q |
| |
|
| | ||||||||||||||| ||||||| ||| |||||||| |||||||||||||||| |
|
|
| T |
1969416 |
gcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggag |
1969474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 11 - 371
Target Start/End: Original strand, 2436914 - 2437268
Alignment:
| Q |
11 |
cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaat |
110 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
2436914 |
cacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtgtgccactaat |
2437013 |
T |
|
| Q |
111 |
cacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtg |
210 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
2437014 |
cacatggcctctttttgccgagcagagaacgaattcggttttgttgagtgagggactaaaagtgggactgaggccaagagttcatgaaaatggcattgtg |
2437113 |
T |
|
| Q |
211 |
gaaagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagta |
310 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||| |||||| ||| | | | ||||||||| ||| | |||||||||||| || |
|
|
| T |
2437114 |
gaaagggtagaggttgctaaggtgatcaagtgtctcatggaaggagaagaa----ctaaa--gtggagtaatatgaaagaactaaaagaagctgcttcta |
2437207 |
T |
|
| Q |
311 |
gtgtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggag |
371 |
Q |
| |
|
|| || ||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
2437208 |
atgcactcaaagaagatggttcttcgacaaagactatttctcaattaacactcaagtggag |
2437268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 2007905 - 2007528
Alignment:
| Q |
13 |
cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca |
112 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| || ||||| ||||||||||| |||||||||||| |||| |||||||| |||||| |
|
|
| T |
2007905 |
cagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatca |
2007806 |
T |
|
| Q |
113 |
catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtgga |
212 |
Q |
| |
|
| |||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||| |||| ||||| || |||||||| ||||| |
|
|
| T |
2007805 |
cgtggcctctatttgctgagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggactgagggcaagtgttaatgaaaatggcatagtgga |
2007706 |
T |
|
| Q |
213 |
aagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagt |
312 |
Q |
| |
|
||||||||| ||||| || ||||||||| |||||||||||| || || |||| |||| | || ||||| ||||||||||| |||||||||||| | | |
|
|
| T |
2007705 |
aagggtagaggttgctaaggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaataacatgaaggaattaaaagaagctgcttcaaat |
2007606 |
T |
|
| Q |
313 |
gtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggagtaactttggtatagaaaaac |
391 |
Q |
| |
|
| | ||||||||||||||| ||||||| ||| |||||||| ||||||| |||||||| || |||||| ||||||||| |
|
|
| T |
2007605 |
gcagtcaaagaagatggttcttctacaaaaactatttctcaaatagcacttaagtggag-aaatttggtgtagaaaaac |
2007528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 2011520 - 2011162
Alignment:
| Q |
13 |
cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca |
112 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||| ||||| ||||| |||||| | ||||| ||||||||||||| |
|
|
| T |
2011520 |
cagattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttgaaagtgtggttcatggggtgccactaatca |
2011421 |
T |
|
| Q |
113 |
catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtgga |
212 |
Q |
| |
|
|||||||| | |||||||| ||| ||| |||||| |||||| ||| ||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| || |
|
|
| T |
2011420 |
catggcctatgtttgctgaacagggaatgaatgcagttttggtgactgagggccttaaagtgggactgaggccaagagttaacgaaaatggtattgtcga |
2011321 |
T |
|
| Q |
213 |
aagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagt |
312 |
Q |
| |
|
|||||| || ||||| || |||||||| ||||||||||||| ||||| ||| |||| ||| ||||||||||||||||| ||||||| |||| || | |
|
|
| T |
2011320 |
aagggtggaggttgctaaggtgatcaagcgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggaattaaaagaagttgcttctaat |
2011221 |
T |
|
| Q |
313 |
gtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggag |
371 |
Q |
| |
|
| || ||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
2011220 |
gcactcaaagaagatggatcttctacaaagactatttctcaattaacactcaagtggag |
2011162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 1965174 - 1965532
Alignment:
| Q |
13 |
cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca |
112 |
Q |
| |
|
||||||||||||||| |||| |||||| |||| |||||||||| ||||||||||||||| ||||| ||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
1965174 |
cagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatca |
1965273 |
T |
|
| Q |
113 |
catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtgga |
212 |
Q |
| |
|
|||||||| | |||||||| ||| ||| |||||| |||||| ||| || ||||| |||||||||||||| |||||||||||||| || || ||||| || |
|
|
| T |
1965274 |
catggcctatgtttgctgaacagggaatgaatgcagttttggtgactgggggccttaaagtgggactgagaccaagagttaacgaaaacggtattgtcga |
1965373 |
T |
|
| Q |
213 |
aagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagt |
312 |
Q |
| |
|
|||||| || ||||| || |||||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||| || |||| || |||| | | |
|
|
| T |
1965374 |
aagggtggaggttgctaaggtgatcaagtgtctcatggaaggagaagagtgtgagaaattgcacaataatatgaaggagttaaaaggagttgcttccaat |
1965473 |
T |
|
| Q |
313 |
gtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggag |
371 |
Q |
| |
|
| || ||||||||||| ||| ||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
1965474 |
gcactcaaagaagatggatcttctacaaagactatatctcaattaacactcaagtggag |
1965532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 10201912 - 10201811
Alignment:
| Q |
61 |
tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtg |
160 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||||| | || ||||||| || | ||||||||| | | |||||| ||||| ||||||| |
|
|
| T |
10201912 |
tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattgagtg |
10201813 |
T |
|
| Q |
161 |
aa |
162 |
Q |
| |
|
|| |
|
|
| T |
10201812 |
aa |
10201811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 10208985 - 10208884
Alignment:
| Q |
61 |
tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtg |
160 |
Q |
| |
|
||||||||||||||||| |||||||||||| || |||||||||| | || ||||||| || | ||||||||| | | |||||| ||||| ||||||| |
|
|
| T |
10208985 |
tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattgagtg |
10208886 |
T |
|
| Q |
161 |
aa |
162 |
Q |
| |
|
|| |
|
|
| T |
10208885 |
aa |
10208884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 5906164 - 5906521
Alignment:
| Q |
13 |
cagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatca |
112 |
Q |
| |
|
|||||| |||||||| |||||| ||||||||||| ||||||| ||| |||||||||| ||||| |||||||| | | ||||||||||||||||||||| |
|
|
| T |
5906164 |
cagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatca |
5906263 |
T |
|
| Q |
113 |
catggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtgga |
212 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| || || ||||||| |||||||| |||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
5906264 |
catggcctctgtttgctgagcagagaatgaatgcatttgtgctgagtgagggcctaaaggtgggagtgaggccaagagttaatgaaaatggcattgtgga |
5906363 |
T |
|
| Q |
213 |
aagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagt |
312 |
Q |
| |
|
|||| |||| || || || ||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||| |||||||| |||| || | |
|
|
| T |
5906364 |
aaggatagaggtttctaaggtgatcaagtgtctcatggaaggggaagaatgtgagaaattgcgcaataatatgaaggaattgaaagaagcagctactaat |
5906463 |
T |
|
| Q |
313 |
gtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtgga |
370 |
Q |
| |
|
| || | |||||||||| ||| ||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
5906464 |
gcacttcaagaagatgggtcttctagaaagactgtttctcaattagcacacaagtgga |
5906521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 29 - 371
Target Start/End: Original strand, 5902696 - 5903038
Alignment:
| Q |
29 |
gtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgc |
128 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| | |||| |
|
|
| T |
5902696 |
gtcacagatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcctttgtttgg |
5902795 |
T |
|
| Q |
129 |
tgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagttaacgagaatggcattgtggaaagggtagaaattgct |
228 |
Q |
| |
|
|||||| |||| |||||| ||| || ||||||| ||||| |||||||||||||||||||| ||||| || ||||||||||| ||||||| |||||| || |
|
|
| T |
5902796 |
tgagcaaagaatgaatgcagttgtgctgagtgagggccttaaagtgggactgaggccaagggttaatgataatggcattgttgaaagggaggaaatttct |
5902895 |
T |
|
| Q |
229 |
gagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaagaagctgctagtagtgtacataaagaagatg |
328 |
Q |
| |
|
| ||||||||| ||||||||||||| |||||| ||| ||| |||| ||||||||||||||||| ||||||||| ||| || || | |||||||| | |
|
|
| T |
5902896 |
aaattgatcaagggtctcatggaaggagaagaatgtgagaatttgcgcaataatatgaaggaattaaaagaagcttctactaatgcgctcaaagaagacg |
5902995 |
T |
|
| Q |
329 |
gttctactacaaagactctttctcaattagcactcaagtggag |
371 |
Q |
| |
|
| ||| ||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
5902996 |
ggtcttctagaaagaccatttctcaattagcactcaagtggag |
5903038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 5890659 - 5890607
Alignment:
| Q |
319 |
aaagaagatggttctactacaaagactctttctcaattagcactcaagtggag |
371 |
Q |
| |
|
||||||||||||||| ||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
5890659 |
aaagaagatggttcttctacaaacattttttctcaattagcactcaagtggag |
5890607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 845085 - 845007
Alignment:
| Q |
11 |
cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgt |
89 |
Q |
| |
|
|||| ||| |||| ||| |||| |||||| |||||||||| || ||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
845085 |
cacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt |
845007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 870369 - 870291
Alignment:
| Q |
11 |
cacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgt |
89 |
Q |
| |
|
|||| ||| |||| ||| |||| |||||| |||||||||| || ||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
870369 |
cacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt |
870291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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