View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_14 (Length: 473)
Name: NF19009_high_14
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 14 - 457
Target Start/End: Complemental strand, 26543392 - 26542949
Alignment:
| Q |
14 |
ttctgatcaataaagaaaacaaggcagcaatatgcatcaacagccatgcatatataaaggaactcatctaccagttaatagcctcttccatggcatacat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26543392 |
ttctgatcaataaagaaaacaaggcagcaatatgcatcaacagccatgcatatataaaggaactcatctaccagttaatagcctcttccatggcatacat |
26543293 |
T |
|
| Q |
114 |
gtactgttatccttaaaaacatgcaattatagaataaatcacttttgaagtacagaatgtgagaggagaaaatttcacataatttatagactgtaatttc |
213 |
Q |
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| T |
26543292 |
gtactgttatccttaaaaacatgcaattatagaataaatcacttttgaagtacagaatgtgagaggagaaaatttcacataatttatagactgtaatttc |
26543193 |
T |
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| Q |
214 |
taaattttccattacatttcagaaacttgtgcatgatgcttgaaaactcaaattcaatcttttaaagtctagtatccattcgccatctaaaatttcttta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26543192 |
taaattttccattacatttcagaaacttgtgcatgatgcttgaaaactcaaattcaatcttttaaagtctagtatccattcgccatctaaaatttcttta |
26543093 |
T |
|
| Q |
314 |
acttgattgactgcaatcaaatcgcttgtacaagccggtgtaatttacctcgaacatataagtaaacaaaaagagagatcaaaagcaaacatggttacag |
413 |
Q |
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| T |
26543092 |
acttgattgactgcaatcaaatcgcttgtacaagccggtgtaatttacctcgaacatataagtaaacaaaaagagagatcaaaagcaaacatggttacag |
26542993 |
T |
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| Q |
414 |
agatatggtatgaagaatatactaaggttaaagcagatatgttt |
457 |
Q |
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| T |
26542992 |
agatatggtatgaagaatatactaaggttaaagcagatatgttt |
26542949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 26537643 - 26537581
Alignment:
| Q |
146 |
aataaatcacttttgaagtacagaatgtgagaggagaaaatttcacataatttatagactgta |
208 |
Q |
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| T |
26537643 |
aataaatcacttttgaagcacagattggcagaggcggaaatttcacattatttatagactgta |
26537581 |
T |
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