View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_20 (Length: 411)
Name: NF19009_high_20
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 4677878 - 4677499
Alignment:
| Q |
16 |
atgagtagactttgatgaatcgatgaaaaagactatggat----ccatagnnnnnnnnatcttgtcaacgaatgtctaaattttttgaaaagaagcatga |
111 |
Q |
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| T |
4677878 |
atgagtaaactttgatgaatcgataaaaaagactatggatggatccatagttttttttatcttgtcaacgaatgtctaaaatatttgagaagaagcatga |
4677779 |
T |
|
| Q |
112 |
tgtgagacttccatcctaacaaactacgttagaaaaacatttataattagtttatcatactatatatttataacaaaattnnnnnnnnttgaaggtcttt |
211 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
4677778 |
tgtgagacttccatcctaacaaactatgttagaaaaacatttataattagtttatcatactatatctttataacaaaattaaaaaaaattgaaggtcttt |
4677679 |
T |
|
| Q |
212 |
ttgtggcccataattttaaggtctaaagctctagcggagtcaattggattatccccaccctaatctaaatagatacagcattgatgtatttgtgtccaaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4677678 |
ttgtggcccataattttaaggtctaaagctctagcggagtcaattggattatccccaccctaatctaaatagatacagcattgatgtatttgtgtcc-aa |
4677580 |
T |
|
| Q |
312 |
ggttaaattgtatagtgaactaaatatctcactcaatagacaatcctttaacaaaggatcaagccaaaacaatgtcgactc |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4677579 |
ggttaaattgtatagtgaactaaatatctcactcaatagacaaccctttaacaaaggatcaagccaaaacaatgtcgactc |
4677499 |
T |
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