View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_21 (Length: 398)
Name: NF19009_high_21
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 222 - 381
Target Start/End: Complemental strand, 1034206 - 1034047
Alignment:
| Q |
222 |
ttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtattttcacaaggaaactaaagaaaatgtaactgaaaacatataaatatc |
321 |
Q |
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| T |
1034206 |
ttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtattttcacaaggaaactaaagaaaatgtaactgaaaacatataaatatc |
1034107 |
T |
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| Q |
322 |
catcttccatgttgtaaacgaattcaaagatgcatctgttgagtaaatgcaaatcttact |
381 |
Q |
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| T |
1034106 |
catcttccatgttgtaaacgaattcaaagatgcatctgttgagtaaatgcaaatcttact |
1034047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 209 - 380
Target Start/End: Complemental strand, 4515883 - 4515712
Alignment:
| Q |
209 |
ttatatggtcattttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtattttcacaaggaaactaaagaaaatgtaactgaaa |
308 |
Q |
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| T |
4515883 |
ttatatggtcattttaaatattggctgagttgtcccagtcaacaagacattaggtttgaactttattttcaccgggaaactaaagaaaatgtaactgaaa |
4515784 |
T |
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| Q |
309 |
acatataaatatccatcttccatgttgtaaacgaattcaaagatgcatctg-ttgagtaaatgcaaatcttac |
380 |
Q |
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| T |
4515783 |
acatataaatatccatcttccatgttgtaaacgaattc-aagatgcatctgtttgagtaaatgcaaatcttac |
4515712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 176 - 377
Target Start/End: Original strand, 50831828 - 50832029
Alignment:
| Q |
176 |
ttgtaaataacgggataaccagacaaaaatgtcttatatggtcattttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtatt |
275 |
Q |
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| T |
50831828 |
ttgtacataatgggacaaccagacaaaaatgtcttgtatagttattttaaatcttggctgagttgtaccagtcaacaagatattaggtatgaactgtatt |
50831927 |
T |
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| Q |
276 |
ttcacaaggaaactaaagaaaatgtaactgaaaacatataaatatccatcttccatgttgtaaacgaattcaaagatgcatctgttgagtaaatgcaaat |
375 |
Q |
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| T |
50831928 |
ttcaccaggaaacttgagaaaatgtaactgaaaatatataaatgtccatttttcatgttgcaaacgaattcaaagatgcatatgttgactaaatgcaaat |
50832027 |
T |
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| Q |
376 |
ct |
377 |
Q |
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|| |
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| T |
50832028 |
ct |
50832029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 50831176 - 50831228
Alignment:
| Q |
35 |
ttggatcaactgatgcggcagtagtttgatattcataaagcccactgagcttc |
87 |
Q |
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| T |
50831176 |
ttggatcaactgatgcggcagtagtttgagattcagaaagcctaccgagcttc |
50831228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 50831502 - 50831554
Alignment:
| Q |
85 |
ttctgacacaactctctgagacctgagtagaactggcgttagagtcaatggta |
137 |
Q |
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| T |
50831502 |
ttctgacacaactctctgaggcctgaatagaactggtgttggagttaatggta |
50831554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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