View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_26 (Length: 380)
Name: NF19009_high_26
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 37409407 - 37409747
Alignment:
| Q |
15 |
gaaaattatcacaatggcaagtaaacaacatagatgtaaccaatgtggaacaatgctggtggttccaatagaagtccaagcctttaaatgttcaatgtgc |
114 |
Q |
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| T |
37409407 |
gaaaattatcacaatggcaagtaaacaacatagatgtaaccaatgtggaacaatgctggtggttccaatagaagtccaagcctttaaatgttcaatgtgc |
37409506 |
T |
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| Q |
115 |
aatggcatcacacatgttcaatccataggtacaatgaatcaagcccataactctcttaatcatattgcaggtctatttagaggcttcatgaatactataa |
214 |
Q |
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| T |
37409507 |
aatggcatcacacatgttcaatccata---------aatcaagcctataactctcttaatcatattgcaggtctatttagaggcttcatgaatactataa |
37409597 |
T |
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| Q |
215 |
caactagctcagcaattaacagcaactcaagtaattatgggacaactcattttgggtattatcatcagcctcagccactaaggccttcataccctttgat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37409598 |
caactagctcagcaattaacagcaactcaagtaattatgggacaactcattttgggtattatcatcagcctcagccactaaggccttcataccctttgat |
37409697 |
T |
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| Q |
315 |
tcctccttctccatatggttccaaaagggcagttttgtgtggaatttgct |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37409698 |
tcctccttctccatatggttccaaaagggcagttttgtgtggaatttgct |
37409747 |
T |
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