View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_high_28 (Length: 374)
Name: NF19009_high_28
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 21344420 - 21344066
Alignment:
| Q |
1 |
agatagaacataacattcatcaatactctcgaagtttaattgacatttgataagttgcagatgaattcaattccaagggtttcacccacactagcaactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21344420 |
agatagaacataacattcatcaatactctggaagtttaattgacatttgataagttgcagatgaattcaattccaagggtttcacccacactagcaactc |
21344321 |
T |
|
| Q |
101 |
taatcaactaactgcgtgtttggattgatggtgagtttagcagaatcatgatgccactgtgatttcgtcaccaaactcatttaatccaaacacacactta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21344320 |
taatcaactaactgcgtgtttggattgatggtgagtttagcagaatcatgatgccattgggatttcgtcaccaaactcatttaatccaaacacacactta |
21344221 |
T |
|
| Q |
201 |
aaaaggaacacataacaattgagagcaactacaccaccatatagaaaccacacaagagttaaattaagactcattgaagaacctattttcctgcagcatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21344220 |
aaaaggaacacataacaattgagagcaactacaccaccatatagaaaccacacaagagttaaattaagactcattgaagaacctattttcctgcagcatt |
21344121 |
T |
|
| Q |
301 |
aattctggtaacttaattttggcatttctttgagttaacacttaacaccaatctttt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21344120 |
aattctggtaacttaattttggcatttc--tgagttaacacttaacaccaatctttt |
21344066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University