View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_high_32 (Length: 362)
Name: NF19009_high_32
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_32 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 17513401 - 17513077
Alignment:
| Q |
20 |
tataccacatgcaatatcatgtataatataattcataaaatccgtaacagaatcaattatctcacacactaattgagagactatcttttaaaattccact |
119 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17513401 |
tataccacaggcaatatcatgtataatataattcataaaatccataacacaatcaattatctcacacactaattgagagactatcttttaaaattccact |
17513302 |
T |
|
| Q |
120 |
tggtaatcatgaaattgctactttaaagcatattcactaattttaaaccatatttaccatgaaatttatttcacttctaatgccttattttcattttaaa |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17513301 |
tggtaatcatgagattgctactttaaagcatattcactaattttaaaccatatttaccatgaaatttatttcacttctaatgccttattttcattttaaa |
17513202 |
T |
|
| Q |
220 |
aaataataaaatagcaatggttaaccctttcattctaaatannnnnnnnngttaacccaaacatactcatggatagtgaaa-tatcttaagcatagcttt |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17513201 |
aaataataaaatagcaatggttaaccctttcattctaaatatttttttttgttaacccaaacatactcatggatagtgaaattatcttaagcatagcttt |
17513102 |
T |
|
| Q |
319 |
ttattcataatttatcaacatcttc |
343 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
17513101 |
ttattcataatttatcaacatcttc |
17513077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 17513898 - 17513693
Alignment:
| Q |
20 |
tataccacatgcaatatcatgtataatataattcataaaatccgtaacagaatcaattatctcacacactaattgagagactatcttttaaaattccact |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17513898 |
tataccacatgcaatatcatgtataatataattcataaaatccataacacaatcaattatctcacacactaattgagagactatcttttaaaattccact |
17513799 |
T |
|
| Q |
120 |
tggtaatcatgaaattgctactttaaagcatattcactaattttaaaccatatttaccatgaaatttatttcacttctaatgccttattttcattttaaa |
219 |
Q |
| |
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|||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17513798 |
tggtaatcatgagatttctactttaaagtatattcactaattttaaaccatatttaccatgaaatttatttcacttctaatgccttattttcattttaaa |
17513699 |
T |
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| Q |
220 |
aaataa |
225 |
Q |
| |
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|||||| |
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| T |
17513698 |
aaataa |
17513693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 437 - 758
Alignment:
| Q |
20 |
tataccacatgcaatatcatgtataatataattcataaaatccgtaacagaatcaattatctcacacactaattgagagactatcttttaaaattccact |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | ||||| | ||||||||||||||| | ||||||||||||||||||| |||||||||| |
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| T |
437 |
tataccacatgcaatatcatgtataatataattcacaaaatacataacatagtcaattatctcacactcaaattgagagactatcttttgaaattccact |
536 |
T |
|
| Q |
120 |
tggtaatcatgaaattgctactttaaagcatattcactaattttaaaccatatttaccatgaaatttatttcacttctaatgccttat-tttcattttaa |
218 |
Q |
| |
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|| || |||||| |||||||| |||| ||||| |||||||||| |||||||||||| |||| |||||| |||||||||| |||||||| ||| ||||||| |
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| T |
537 |
tgttattcatgagattgctaccttaaggcatactcactaatttcaaaccatatttagcatggaatttagttcacttctagtgccttatattttattttaa |
636 |
T |
|
| Q |
219 |
aaaataataaaatagcaatggttaaccctttcattctaaatannnnnnnnngttaacccaaacatactcatggatagtgaaa-tatcttaagcatagctt |
317 |
Q |
| |
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| ||||||||||||||| |||||||||||||| ||| | | | ||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
637 |
ataataataaaatagcattggttaaccctttccttcaagaaa----aaattgttaacccaaacatactcatggatagtgaaattatcttaaatatagctt |
732 |
T |
|
| Q |
318 |
tttattcataatttatcaacatcttc |
343 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
733 |
tttattcataatttatcaacatcttc |
758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 133 - 343
Target Start/End: Complemental strand, 29362127 - 29361912
Alignment:
| Q |
133 |
attgctactttaaagcatattcactaattttaaaccatatttaccatgaaatttatttcacttctaatgccttattttcattttaaaaaataataaaata |
232 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||| |||||| || |||||||| | |||||||||| |
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| T |
29362127 |
attgctactttaaggcatattcactgattttaaaccatatttgccatggaatttagttcacttctaataccttatctttattttaaatattaataaaata |
29362028 |
T |
|
| Q |
233 |
gcaatggttaa--ccctttcattcta--aatannnnnnnnngttaacccaaacatactcatggatagtgaaa-tatcttaagcatagctttttattcata |
327 |
Q |
| |
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||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| | ||| |
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| T |
29362027 |
gcattggttaaccccctttcattctattttttttttttttggttaacccaaacatactcatggatagtgaaattatcttaagtatagccttttacttata |
29361928 |
T |
|
| Q |
328 |
atttatcaacatcttc |
343 |
Q |
| |
|
|||||||||||||||| |
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| T |
29361927 |
atttatcaacatcttc |
29361912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 11232517 - 11232649
Alignment:
| Q |
38 |
atgtataatataattcataaaatccgtaacagaatcaattatctcacacactaattgagagactatcttttaaaattccacttggtaatcatgaaattgc |
137 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||| ||||| |
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| T |
11232517 |
atgtataatataattcataaaatccataaca-aatcaattatctcacacacgaattgagagaccatcttttaaaattccacttgttattcatgagattgc |
11232615 |
T |
|
| Q |
138 |
tactttaaagcatattcactaattttaaaccatat |
172 |
Q |
| |
|
||| ||| |||||||||||||||||||| ||||| |
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| T |
11232616 |
tac-ctaaggcatattcactaattttaaatcatat |
11232649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 155 - 343
Target Start/End: Complemental strand, 34246125 - 34245936
Alignment:
| Q |
155 |
actaattttaaaccatatttaccatgaaatttatttcactt-ctaatgccttattttc-attttaaaaaataataaaatagcaatggttaaccctttcat |
252 |
Q |
| |
|
|||||||| ||| |||||| |||||| ||||| ||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| | |
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|
| T |
34246125 |
actaatttcaaatcatatt-accatggaatttcgttcactttctaatgccttattttttattttaaataataataaaatagcattggttaaccctttcct |
34246027 |
T |
|
| Q |
253 |
tctaaatannnnnnnnngttaacccaaacatactcatggatagtgaaa-tatcttaagcatagctttttattcataatttatcaacatcttc |
343 |
Q |
| |
|
|| ||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34246026 |
tcaaaa-aaaaaaattggttaacccaaacatactcatggatagtgaaactatcataagcatagctttttattcataatttatcaacatcttc |
34245936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 34246399 - 34246276
Alignment:
| Q |
22 |
taccacatgcaatatcatgtataatataattcataaaatccgtaacagaatcaattatctcacacactaattgagagactatcttttaaaattccacttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||| | ||||| | ||||||||||||||| | ||||||||||||||||||| |||||||||||| |
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|
| T |
34246399 |
taccacatgcaatatcatgtataatacaattcacaaaatacataacatagtcaattatctcacactcaaattgagagactatcttttgaaattccacttg |
34246300 |
T |
|
| Q |
122 |
gtaatcatgaaattgctactttaa |
145 |
Q |
| |
|
|| |||||| |||||||| |||| |
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| T |
34246299 |
ttattcatgagattgctaccttaa |
34246276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 1092662 - 1092772
Alignment:
| Q |
14 |
tcatcatataccacatgcaatatcatgtataatataattcataaaatccgtaacagaatcaattatctcacacactaattgagagactatcttttaaaat |
113 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1092662 |
tcatcatataccacatgcaatat-------agtataattcataaaatccataacacaatcaattatctcacacacaaattgagagactatcttttaaaat |
1092754 |
T |
|
| Q |
114 |
tccacttggtaatcatga |
131 |
Q |
| |
|
|||||||| || |||||| |
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|
| T |
1092755 |
tccacttgttattcatga |
1092772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 1093308 - 1093404
Alignment:
| Q |
150 |
tattcactaattttaaaccatatttaccatgaaatttatttcacttctaatgccttattttcattttaaaaaataataaaatagcaatggttaaccc |
246 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||| ||||| | |||| ||||||||| |||||||| ||||||||||||||| |||||||||| |
|
|
| T |
1093308 |
tattcactaatttcaaaccatatttaccatggaacttagttcacatttaataccttatttttattttaaataataataaaatagcattggttaaccc |
1093404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Original strand, 1093397 - 1093470
Alignment:
| Q |
270 |
gttaacccaaacatactcatggatagtgaaat-atcttaagcatagctttttattcataatttatcaacatcttc |
343 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||| ||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
1093397 |
gttaacccaaacatgctcatggaaagtaaaattatcttaatcatagctttttattcat-atttatcaacatcttc |
1093470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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