View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_38 (Length: 350)
Name: NF19009_high_38
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 162 - 336
Target Start/End: Original strand, 3805895 - 3806069
Alignment:
| Q |
162 |
gacgggaggagtatagttttaagttaggtctcataagggacccacctttgaaatcatttttcttgagtataaaatacattgaaactcataataccaagtt |
261 |
Q |
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| T |
3805895 |
gacgggaggagtatagttttaaattaggtctcataagggacccacctttgaaatcatttttcttgagtataaaatacattgaaactcataataccaagtt |
3805994 |
T |
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| Q |
262 |
gagcaaaccgtgggtgaagaaaacataccttagaaaatgagattcatgagtatttgctcttgggttgcaaaaact |
336 |
Q |
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| T |
3805995 |
gagcaaaccgtgggtgaagaaaacataccttagaaaatgagattcatgagtatttgctcttgggttgcaaaaact |
3806069 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 3805721 - 3805781
Alignment:
| Q |
24 |
ataaataatgatttgtatataaatgttaaattgcattcgtaagcaatttacacgcaaataa |
84 |
Q |
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| T |
3805721 |
ataaataatgatttgtatataaatgttaaattgtattcgtaagcaatttacacgcaaataa |
3805781 |
T |
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