View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_39 (Length: 349)
Name: NF19009_high_39
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 66 - 333
Target Start/End: Complemental strand, 29003173 - 29002909
Alignment:
| Q |
66 |
attgaagtaagaacgttaatatatacaccatctccatttgtttactacta-----gtgctgtacacattggaatttgaaagcgttggagtaattgttgca |
160 |
Q |
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| T |
29003173 |
attgaagtaagaacgttgatat------catctccatttgtttactactacagtagtactgtacacatcggaaattgaaagcgttggagtaattgttgca |
29003080 |
T |
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| Q |
161 |
tagaaatgagatataatgtgtgctactatctcttcttttgagctatggctccatgaaaatatgcttatatgttcccaacgacatggttatatagtagtat |
260 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29003079 |
tagaaatgagatataatgtgtgctactatcacttcttttgagtt--ggctccatgaaaatatgcttatatgttcccaacgacatggttatatagtagtat |
29002982 |
T |
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| Q |
261 |
attgattgattaggaattaacttgatttggcatgtaaatatgtagtggcatgacacttaatttggcatggaac |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29002981 |
attgattgattaggaattaacttgatttggcatgtaaatatgtagtggcatgacacttaatttggcatggaac |
29002909 |
T |
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