View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_40 (Length: 349)
Name: NF19009_high_40
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 2333343 - 2333022
Alignment:
| Q |
11 |
cacagagatcgcccgtggtggccatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttctggtaaaaagcaggtggaaaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
2333343 |
cacagagatcgcccgtggtggccatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttccggttaaaagcaggtggaaaag |
2333244 |
T |
|
| Q |
111 |
attaagattttcgcaaacttttctagaaaaatttctttctggcatctgagcaagaccagcaagcttaattaagcttacacattctagaaaagattatggn |
210 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2333243 |
attaagattttcgcaaacttttctagaaaaaattctttctggcatctgagcaagaccagcaagcttaattaagcttacacattctagaaaagattatggt |
2333144 |
T |
|
| Q |
211 |
nnnnnnccctcataatctgatggaattcaaaggtccgaattattatactcacatttccaaaaggaaaatcaaattgttacacaatgagctctttggcttg |
310 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2333143 |
ttttttccctcataatttgatggaattcaaaggtccgaattattatactcacatttccaaaaggaaaatcaaattgttacacaatgagctctttggcttg |
2333044 |
T |
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| Q |
311 |
taaattattgctgcacggtatt |
332 |
Q |
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|||||||||||||||||||||| |
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| T |
2333043 |
taaattattgctgcacggtatt |
2333022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 47778466 - 47778145
Alignment:
| Q |
11 |
cacagagatcgcccgtggtggccatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttctggtaaaaagcaggtggaaaag |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47778466 |
cacagagatcgcccgtggtgggcatattaacacggcatgattttacaccggaacatatattgggtatgcatccttttctggtaaaaagcaggtggaaaag |
47778367 |
T |
|
| Q |
111 |
attaagattttcgcaaacttttctagaaaaatttctttctggcatctgagcaagaccagcaagcttaattaagcttacacattctagaaaagattatggn |
210 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47778366 |
attaagattttggcaaacttttctagaaaaaattctttctggcatctgagcaagaccagcaagcttaattaagcttacacattctagaaaagattatggt |
47778267 |
T |
|
| Q |
211 |
nnnnnnccctcataatctgatggaattcaaaggtccgaattattatactcacatttccaaaaggaaaatcaaattgttacacaatgagctctttggcttg |
310 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47778266 |
ttttttccctcataatttgatggaattcaaaggtccgaattattatactcacatatccaaaaggaaaatcaaattgttagacaatgagctctttggcttg |
47778167 |
T |
|
| Q |
311 |
taaattattgctgcacggtatt |
332 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
47778166 |
taaattattgctgcacggtatt |
47778145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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