View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_high_42 (Length: 344)
Name: NF19009_high_42
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_42 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 51551735 - 51552078
Alignment:
| Q |
1 |
aaggatcatcattggagttatttcttccgttgtcttcgtcggtctcataggttgtgcattctttgttgctaccacaaaatacaatcctttnnnnnnnnnn |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51551735 |
aaggatcatcattggagttatttcttccgttgtcttcgtcggtctcataggttgtgcattctttgttgctaccacaaaatacaatccttttggtggtggt |
51551834 |
T |
|
| Q |
101 |
nnnnnnnnnaatcatccagaagacacttcaaccgctaatggtagcaaacatgttgcacattcagaaaaggtagtgaaattggtatgcagttctgcagatt |
200 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51551835 |
ggtggtggtagtcatccagaagacagttcaaccgctaatggtagcaaacatgttgcacattcagaaaaggtagtgaaattggtatgcagttctgcagatt |
51551934 |
T |
|
| Q |
201 |
acaaagaaaaatgtgaaggacctcttaacaaagcagtggaaaaggatcctaaacttcaacaccctaaagaccttctcaaagtttatcttaaaactgtaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51551935 |
acaaagaaaaatgtgaaggacctcttaacaaagcagtggaaaaggatcctaaacttcaacaccctaaagaccttctcaaagtttatcttaaaactgtaga |
51552034 |
T |
|
| Q |
301 |
ggatgaggttaacaaagccttcaacaaaacaaattcattcaaat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51552035 |
ggatgaggttaacaaagccttcaacaaaacaaattcattcaaat |
51552078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University