View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_51 (Length: 322)
Name: NF19009_high_51
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_51 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 307
Target Start/End: Complemental strand, 27430198 - 27429911
Alignment:
| Q |
20 |
gtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtca |
119 |
Q |
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| T |
27430198 |
gtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtca |
27430099 |
T |
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| Q |
120 |
cactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtccttaattggcctctttcttgaaatatgtc |
219 |
Q |
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| T |
27430098 |
cactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtccttaattggcctctttcttgaaatatgtc |
27429999 |
T |
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| Q |
220 |
aatgaattatcctttgtttaagtttttgagtgtgtttttctaatatgaattttagtctagaaaaagtaatgtaaatttgtgcaacact |
307 |
Q |
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| T |
27429998 |
aatgaattatcctttgtttaagtttttgagtgtgtttttctaatatgaattttagtctagaaaaagtaatgtaaatttgtgcaacact |
27429911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 27447475 - 27447281
Alignment:
| Q |
20 |
gtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtca |
119 |
Q |
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||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27447475 |
gtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatgtca |
27447376 |
T |
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| Q |
120 |
cactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtccttaattggcctctttcttgaaat |
214 |
Q |
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| T |
27447375 |
cactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtccttaattggcctctttcttgaaat |
27447281 |
T |
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