View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_high_66 (Length: 267)
Name: NF19009_high_66
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_66 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 37814390 - 37814163
Alignment:
| Q |
13 |
atacttcccaagttaaaccttatcaatctccactcacattgcttagtataaataggggttccccaagagaatgacttggtcacagtccaagtgaaaggga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37814390 |
atacttcccaagttaaaccttatcaatctccactcacattgcttagtataaataggggttccccaagagaatgacttggtcacagtccaagtgaaaggga |
37814291 |
T |
|
| Q |
113 |
aaataaaaagagggggaataaagacaaaatggaatcaagtcatgtaatatccattgcaaatgaagaagataacaacaacaacgacaacaatattgctcaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37814290 |
aaataaaaagagggggaataaagacaaaatggaatcaagtcatgtaatatccattgcaaatgaagaagataacaacaacaacgacaacaatattgctcaa |
37814191 |
T |
|
| Q |
213 |
atgaagaatgaaacaaatacccatcttg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37814190 |
atgaagaatgaaacaaatacccatcttg |
37814163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University