View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_high_67 (Length: 264)

Name: NF19009_high_67
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_high_67
NF19009_high_67
[»] chr8 (3 HSPs)
chr8 (109-250)||(26414718-26414859)
chr8 (109-230)||(5736532-5736653)
chr8 (109-228)||(34954773-34954892)
[»] chr4 (2 HSPs)
chr4 (109-243)||(36658951-36659089)
chr4 (109-168)||(39048565-39048625)
[»] chr1 (3 HSPs)
chr1 (109-230)||(44450699-44450820)
chr1 (109-230)||(44651589-44651710)
chr1 (119-232)||(8465090-8465202)
[»] chr7 (1 HSPs)
chr7 (109-231)||(33379795-33379917)
[»] chr3 (3 HSPs)
chr3 (119-243)||(49086659-49086783)
chr3 (109-228)||(49356730-49356848)
chr3 (112-207)||(33794998-33795094)
[»] chr2 (3 HSPs)
chr2 (109-194)||(2778627-2778712)
chr2 (109-228)||(16333819-16333938)
chr2 (109-228)||(16125687-16125806)
[»] chr6 (1 HSPs)
chr6 (110-232)||(32360257-32360378)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 26414718 - 26414859
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||  |||||||||    
T  26414718 cagacagccaatcaaaatcaaccacgtgtcacccattatccacaaacaatcttctatctccgcctctcctgcagctcacccgcgcctgttagcgcgtgtt 26414817  T
Q  209 gtgcacgcgccatgcttggccaactattggcttccacatgtc 250  Q
    | ||||||||||||||||||||||||||||||||| ||||||    
T  26414818 gcgcacgcgccatgcttggccaactattggcttccgcatgtc 26414859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 5736532 - 5736653
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    ||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    |||||||||| |||| ||||||||     
T  5736532 cagacagccaatcagaatcagccacgtgtcatccattatccacacacaatcttctctctccgcctctcctgaccgtcactcgcgcttgtctgcgcgtgta 5736631  T
Q  209 gtgcacgcgccatgcttggcca 230  Q
    | ||||||||||||||||||||    
T  5736632 gcgcacgcgccatgcttggcca 5736653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 34954892 - 34954773
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtca-cccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 207  Q
    ||||||||| |||| |||||||||||||||| ||||||||||| ||| |  |||||||||||   |||||||||   ||||||||||||||||| |||||    
T  34954892 cagacagccaatcagaatcagccacgtgtcaacccattatccataaagatgcttctctctccgt-tctcctgcacaccactcgcgcctgtcggcacgtgt 34954794  T
Q  208 tgtgcacgcgccatgcttggc 228  Q
    || |||||||||| |||||||    
T  34954793 tgcgcacgcgccaggcttggc 34954773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 109 - 243
Target Start/End: Original strand, 36658951 - 36659089
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaat----cttctctctccacctctcctgcagctcactcgcgcctgtcggcgcg 204  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||||||||    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  36658951 cagacagccaatcacaatcagccacgtgtcatccattatccacaaacaatcaatcttctctctccgcctctcctgcagctcactcgcgcctgtcggcgcg 36659050  T
Q  205 tgttgtgcacgcgccatgcttggccaactattggcttcc 243  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  36659051 tgttgcgcacgcgccatgcttggccaactgttggcttcc 36659089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 39048625 - 39048565
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccac-aaacaatcttctctctc 168  Q
    |||| |||| |||| ||||||||||||||||||||||||||||  |||| |||||||||||    
T  39048625 cagaaagccaatcagaatcagccacgtgtcacccattatccactcaacattcttctctctc 39048565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 44450820 - 44450699
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    ||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    ||||||||||||||||||||||||     
T  44450820 cagacagccaatcagaatcagccacgtgtcatccattatccacacacaatcttctctctccgcctctcctgaccatcactcgcgcctgtcggcgcgtgta 44450721  T
Q  209 gtgcacgcgccatgcttggcca 230  Q
    | ||||||||||||||||||||    
T  44450720 gcgcacgcgccatgcttggcca 44450699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 44651589 - 44651710
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    ||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||    ||||||||||||||||||||||||     
T  44651589 cagacagccaatcagaatcagccacgtgtcatccattatccacacacaatcttctctctccgcctctcctgaccgtcactcgcgcctgtcggcgcgtgta 44651688  T
Q  209 gtgcacgcgccatgcttggcca 230  Q
    | ||||||||||||||||||||    
T  44651689 gcgcacgcgccatgcttggcca 44651710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 8465090 - 8465202
Alignment:
Q  119 atcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctc-tcctgcagctcactcgcgcctgtcggcgcgtgttgtgcacgcg 217  Q
    |||||||||||||| ||||||| || ||||||||||  ||||||||||| | |||| | |||||   ||||||||| |||||||||||||||  ||| ||    
T  8465090 atcaaaatcagccatgtgtcacacactatccacaaagcatcttctctcttcgcctcttgctgca--ccactcgcgcttgtcggcgcgtgttgcacacacg 8465187  T
Q  218 ccatgcttggccaac 232  Q
    || |||||| |||||    
T  8465188 ccttgcttgcccaac 8465202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 33379795 - 33379917
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    |||||| || |||| |||| ||||||| ||| |||||||||| |  ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  33379795 cagacaaccaatcacaatctgccacgtttcatccattatccatatgcaatcttgtctctccgcctctcctgcagctcactcgcgcctgtcggcgcgtgtt 33379894  T
Q  209 gtgcacgcgccatgcttggccaa 231  Q
    | ||||| |||||||||||||||    
T  33379895 gcgcacgagccatgcttggccaa 33379917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 49086659 - 49086783
Alignment:
Q  119 atcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgttgtgcacgcgc 218  Q
    |||| ||||||| ||||||||| ||||||||| |  ||||||||||||||| ||||||||||||||||||||| ||||||| || |||||| ||||||||    
T  49086659 atcacaatcagctacgtgtcactcattatccatatgcaatcttctctctccgcctctcctgcagctcactcgcacctgtcgacgtgtgttgcgcacgcgc 49086758  T
Q  219 catgcttggccaactattggcttcc 243  Q
    |||||||||| || | |||||||||    
T  49086759 catgcttggctaaatgttggcttcc 49086783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 49356848 - 49356730
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtca-cccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 207  Q
    ||||||||| |||| |||||||||||| ||| ||||||||||||||| | |||||||||| |   ||||||| | | ||||||||||||||||||| |||    
T  49356848 cagacagccaatcagaatcagccacgtatcaacccattatccacaaagattcttctctcttcgt-tctcctg-accccactcgcgcctgtcggcgcttgt 49356751  T
Q  208 tgtgcacgcgccatgcttggc 228  Q
    || ||||||||||||||||||    
T  49356750 tgcgcacgcgccatgcttggc 49356730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 33795094 - 33794998
Alignment:
Q  112 acagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagc-tcactcgcgcctgtcggcgcgtgt 207  Q
    |||||| |||| |||||| |||||||||||||||||||| |||  || |||||||||| |||||||| ||||  |||||| | ||||||| ||||||    
T  33795094 acagccaatcagaatcagtcacgtgtcacccattatccataaagcatattctctctccgcctctcctacagcaacactcgtgtctgtcggtgcgtgt 33794998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 2778712 - 2778627
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcc 194  Q
    |||||| || ||||||||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||    
T  2778712 cagacaaccaatcaaaatcagccacgtgtcatccattatccacaaagaattttctctctccgcctctcctgcagcacactcgcgcc 2778627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 16333819 - 16333938
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacc-cattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 207  Q
    ||||||||| |||| |||||||||||||||| | ||||||||||||| | ||||||||||||   |||||||||   |||||||||||||||||||||||    
T  16333819 cagacagccaatcagaatcagccacgtgtcaactcattatccacaaagattcttctctctccgt-tctcctgcacaccactcgcgcctgtcggcgcgtgt 16333917  T
Q  208 tgtgcacgcgccatgcttggc 228  Q
    || |||||||||| |||||||    
T  16333918 tgcgcacgcgccaagcttggc 16333938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 16125806 - 16125687
Alignment:
Q  109 cagacagccgatcaaaatcagccacgtgtcacc-cattatccacaaacaatcttctctctccacctctcctgcagctcactcgcgcctgtcggcgcgtgt 207  Q
    ||||||||| |||| ||||||||| |||||| | ||||||||||||| | ||||||||||||   |||||||||   |||||||||||||||||||||||    
T  16125806 cagacagccaatcagaatcagccatgtgtcaactcattatccacaaagattcttctctctccgt-tctcctgcacaccactcgcgcctgtcggcgcgtgt 16125708  T
Q  208 tgtgcacgcgccatgcttggc 228  Q
    || ||| ||| || |||||||    
T  16125707 tgcgcatgcgtcaggcttggc 16125687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 232
Target Start/End: Original strand, 32360257 - 32360378
Alignment:
Q  110 agacagccgatcaaaatcagccacgtgtcacccattatccacaaacaatcttctctctccacct-ctcctgcagctcactcgcgcctgtcggcgcgtgtt 208  Q
    |||||||| |||| ||||||||| ||||||| || ||| ||||||  ||||||||||||| ||| || |||||   ||||||||||||| ||||||||||    
T  32360257 agacagccaatcagaatcagccatgtgtcacacactattcacaaagcatcttctctctccgcctcctgctgca--ccactcgcgcctgttggcgcgtgtt 32360354  T
Q  209 gtgcacgcgccatgcttggccaac 232  Q
    |  || ||||| |||||| |||||    
T  32360355 gcacatgcgccttgcttgcccaac 32360378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University