View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19009_high_68 (Length: 264)

Name: NF19009_high_68
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19009_high_68
NF19009_high_68
[»] chr6 (3 HSPs)
chr6 (13-264)||(6935983-6936234)
chr6 (19-253)||(6922141-6922374)
chr6 (79-253)||(6948671-6948844)
[»] chr7 (3 HSPs)
chr7 (79-253)||(1986748-1986921)
chr7 (147-253)||(13417722-13417828)
chr7 (157-228)||(19721222-19721293)
[»] scaffold0024 (2 HSPs)
scaffold0024 (147-252)||(161085-161190)
scaffold0024 (7-87)||(160972-161052)
[»] chr2 (4 HSPs)
chr2 (172-235)||(5437654-5437717)
chr2 (154-235)||(18921514-18921595)
chr2 (172-216)||(553767-553811)
chr2 (179-215)||(20578959-20578995)
[»] chr1 (2 HSPs)
chr1 (177-215)||(42414172-42414210)
chr1 (175-209)||(43907690-43907724)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 6936234 - 6935983
Alignment:
Q  13 aatatccttctagggtttcttccacaaaaaattccaaagggttttcacttccaactcaacaacaggactgttctcatgaatatcaatcgtctgataatcc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6936234 aatatccttctagggtttcttccacaaaaaattccaaagggttttcacttccaactcaacaacaggactgttctcatgaatatcaatcgtctgataatcc 6936135  T
Q  113 tccctgacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccga 212  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6936134 tccctgacgaacttatcgacaaagtcgtaacgccccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccga 6936035  T
Q  213 tccagacttcgtcaaaaggcaccataagaagcaatctacacacctcgctttt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6936034 tccagacttcgtcaaaaggcaccataagaagcaatctacacacctcgctttt 6935983  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 6922374 - 6922141
Alignment:
Q  19 cttctagggtttcttccacaaaaaattccaaagggttttcacttccaact-caacaacaggactgttctcatgaatatcaatcgtctgataatcctccct 117  Q
    |||||||||||||||||||||||| ||| || |||||||||| | ||||| |||||||   ||||||||||||||||||  || |||| ||||||||| |    
T  6922374 cttctagggtttcttccacaaaaagttcgaa-gggttttcacgtacaacttcaacaacct-actgttctcatgaatatccctcctctggtaatcctccat 6922277  T
Q  118 gacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccag 217  Q
    ||||| ||||||| | ||||| |||    ||| ||| ||||| |||| |||  |||||||||||||| |||||| ||||||||||||||||  ||||| |    
T  6922276 gacgaccttatcgtcgaagtcctaatgttcctcgacataaaatctctaatgtcgatgaagtgtgtttccaagtcttggaaaaccctaatcttggatcccg 6922177  T
Q  218 acttcgtcaaaaggcaccataagaagcaatctacac 253  Q
    |||| | ||||| ||||| |||||||||||||||||    
T  6922176 actttgccaaaatgcaccttaagaagcaatctacac 6922141  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 6948844 - 6948671
Alignment:
Q  79 actgttctcatgaatatcaatcgtctgataatcctccctgacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagt 178  Q
    ||||||||||||||||||  || |||| |||| |||| |||||| |||||||   ||||| ||||   |||  |||||||| |||| ||| |||||||||    
T  6948844 actgttctcatgaatatccctcctctggtaattctccatgacgaccttatcgttgaagtcctaacgttcctc-acgtaaaatctctaatgttgatgaagt 6948746  T
Q  179 gtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaatctacac 253  Q
    |||||||||||||||||||||||||||| ||||||||  |||||| ||||| ||||| |||||||||||||||||    
T  6948745 gtgtttgcaagtcatggaaaaccctaatatccgatccctacttcgccaaaatgcaccttaagaagcaatctacac 6948671  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 1986921 - 1986748
Alignment:
Q  79 actgttctcatgaatatcaatcgtctgataatcctccctgacgaacttatcgacaaagtcgtaaccccccttgacgtaaaaactctgatgctgatgaagt 178  Q
    ||||||||||||||||||  || |||| |||| |||| |||||||||||||| | ||||| ||||   ||| ||||||||| |||| ||| |||||||||    
T  1986921 actgttctcatgaatatccctcctctggtaattctccatgacgaacttatcgtcgaagtcctaacgttcctcgacgtaaaatctctaatgttgatgaagt 1986822  T
Q  179 gtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaatctacac 253  Q
    |||||||||||||||||||||||||||| ||| ||||  |||||| ||||| ||||| ||| |||||||||||||    
T  1986821 gtgtttgcaagtcatggaaaaccctaatatcccatccctacttcgccaaaatgcaccttaa-aagcaatctacac 1986748  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 13417828 - 13417722
Alignment:
Q  147 ccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaa 246  Q
    |||||| |||||| |||||||   |||||||||||| |||||||| |||||||||||| |||| ||||||  ||||||||||| ||||| ||||| ||||    
T  13417828 ccttgatgtaaaatctctgataaggatgaagtgtgtatgcaagtcgtggaaaaccctattctctgatccactcttcgtcaaaatgcaccttaagaggcaa 13417729  T
Q  247 tctacac 253  Q
    |||||||    
T  13417728 tctacac 13417722  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 19721222 - 19721293
Alignment:
Q  157 aaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaa 228  Q
    |||||||||||||  ||||| ||||| ||||| |||| ||||||||||||||| ||||| | ||||| ||||    
T  19721222 aaaactctgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcccgccttcgccaaa 19721293  T

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Target: scaffold0024 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 252
Target Start/End: Original strand, 161085 - 161190
Alignment:
Q  147 ccttgacgtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcaccataagaagcaa 246  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||  |||||| |||    
T  161085 ccttgacgtaaaatctcttatgcagatgaagtgtgtttgcaagtcttggaaaaccctaatctccgatccagtcttcgtcaaaatgcactttaagaaacaa 161184  T
Q  247 tctaca 252  Q
    ||||||    
T  161185 tctaca 161190  T

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Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 160972 - 161052
Alignment:
Q  7 tccaagaatatccttctagggtttcttccacaaaaaattccaaagggttttcacttccaa-ctcaacaacaggactgttctc 87  Q
    |||| ||||| |||||||||||||||||||||||| ||| | |||||||||||||| ||| ||||||| | | |||||||||    
T  160972 tccatgaatacccttctagggtttcttccacaaaagatt-cgaagggttttcactttcaacctcaacacccgcactgttctc 161052  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 5437717 - 5437654
Alignment:
Q  172 atgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcacc 235  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||   |||||||||| |||||    
T  5437717 atgaagtgtgtttgcaagtcatggaacaccctcatctccgaaccatttttcgtcaaaatgcacc 5437654  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 18921595 - 18921514
Alignment:
Q  154 gtaaaaactctgatgctgatgaagtgtgtttgcaagtcatggaaaaccctaatctccgatccagacttcgtcaaaaggcacc 235  Q
    ||||||||||||||||  ||||| || |||||||| |||| |||||||||||| ||  ||||   ||||||||||| |||||    
T  18921595 gtaaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaaatgcacc 18921514  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 553767 - 553811
Alignment:
Q  172 atgaagtgtgtttgcaagtcatggaaaaccctaatctccgatcca 216  Q
    ||||||||||||||||| |||||||| ||||| ||||| ||||||    
T  553767 atgaagtgtgtttgcaaatcatggaacaccctcatctctgatcca 553811  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 20578995 - 20578959
Alignment:
Q  179 gtgtttgcaagtcatggaaaaccctaatctccgatcc 215  Q
    |||||||||| |||||||||||||||||||| |||||    
T  20578995 gtgtttgcaaatcatggaaaaccctaatctctgatcc 20578959  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 42414172 - 42414210
Alignment:
Q  177 gtgtgtttgcaagtcatggaaaaccctaatctccgatcc 215  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  42414172 gtgtgtatgcaaatcatggaaaaccctaatctccgatcc 42414210  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 43907690 - 43907724
Alignment:
Q  175 aagtgtgtttgcaagtcatggaaaaccctaatctc 209  Q
    |||||||||||||| ||||||||||||||||||||    
T  43907690 aagtgtgtttgcaaatcatggaaaaccctaatctc 43907724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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