View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_71 (Length: 260)
Name: NF19009_high_71
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_71 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 40085377 - 40085636
Alignment:
| Q |
1 |
acacaattttcatctctgatcctgagcgacgcggcccttacgagttccttgaaatcatcatcacttgtggttgatgttgtagagttaacactgaagctcc |
100 |
Q |
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| T |
40085377 |
acacaattttcatctctgatcctaagcgacgcggcccttacgagttccttgaaatcatcatcacttatggtcgatgttgtagagttaacactgaagctcc |
40085476 |
T |
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| Q |
101 |
taggaaaggagtaaagttgcgtaggacatcccatggttgcatgatctacataggcaaaatcacgagaacattggatcatgccattgacatacatgtcctt |
200 |
Q |
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| T |
40085477 |
taggaaaggagtaaagttgcgtaggacatcccatggttgcatgatctacataggcaaaatcacgagaacattggatcatgccattgacatacatgtcctt |
40085576 |
T |
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| Q |
201 |
tacctttaccaggaaccttaagggtgccttcatgtacctggtgagtttgcttcctttgct |
260 |
Q |
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| T |
40085577 |
taactttaccaggaaccttaagggtgccttcatgtacctggtgagcttgcttcctttgct |
40085636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 40081081 - 40081154
Alignment:
| Q |
164 |
gagaacattggatcatgccattgacatacatgtcctttacctttaccaggaaccttaagggtgccttcatgtac |
237 |
Q |
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| T |
40081081 |
gagaacaatggatcatgccacggacgtacaagtcctttacctttgtcaacaaccttaaaggtgccttcatgtac |
40081154 |
T |
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