View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_high_74 (Length: 250)
Name: NF19009_high_74
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_74 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6485218 - 6485456
Alignment:
| Q |
1 |
ctatcggattccgaaggtatcgagtccccttcagaagtcatagaagtcatacggtgttgtacctgcatactctccgaaacactccaaaccttaaccgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485218 |
ctatcggattccgaaggtatcgagtccccttcagaagtcatagaagtcatacggtgctgtacctgcatactctccgaaacactccaaaccttaaccgatt |
6485317 |
T |
|
| Q |
101 |
tatccaaactcccactatacaatatccaccgttgatcgcctctagcatcagattcgcgatcctgctccactgctaaacatttaacgggaccatcatgtcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485318 |
tatccaaactcccactatacaatatccaccgttgatcgcctctagcatcagattcgcgatcctgctccactgctaaacatttaacgggaccatcatgtcc |
6485417 |
T |
|
| Q |
201 |
cgttaaaacagacatacacgtgtgaataacaccgtctct |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6485418 |
cgttaaaacagacatacacgtgtgaataacaccgtctct |
6485456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 6916776 - 6916822
Alignment:
| Q |
83 |
tccaaaccttaaccgatttatccaaactcccactatacaatatccac |
129 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
6916776 |
tccaaaccttaacggacttatccaaacttccactatacaaaatccac |
6916822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University