View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_75 (Length: 250)
Name: NF19009_high_75
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_75 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 228
Target Start/End: Original strand, 29519341 - 29519559
Alignment:
| Q |
10 |
gcagagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29519341 |
gcagagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattac |
29519440 |
T |
|
| Q |
110 |
tagataaggacgacgataaacaagctttgcaatcaacaagtaaatctatgagccttgatttcgtttaagagaattaagcgaataagttcaaataatgcat |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29519441 |
tagataaggacgacgataaacaagctttacaatcaacaagtaaatctatgagccatgatttcgtttaagagaattaagtgaataagttcaaataatgcat |
29519540 |
T |
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| Q |
210 |
ctgagtaaatcatttagtt |
228 |
Q |
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||||||||||||||||||| |
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| T |
29519541 |
ctgagtaaatcatttagtt |
29519559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 5332715 - 5332497
Alignment:
| Q |
10 |
gcagagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattac |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5332715 |
gcagagatctcaaaatgcataaatcataaaataaaatcctataataggcatacaataggaactaagtgaataaggactacttggttttgacaatgattac |
5332616 |
T |
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| Q |
110 |
tagataaggacgacgataaacaagctttgcaatcaacaagtaaatctatgagccttgatttcgtttaagagaattaagcgaataagttcaaataatgcat |
209 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5332615 |
tagataaggacggcgataaacaagctttgtaatcaacaagtaaatctatgagccatgatttcgtttaagagaattaagtgaataagttcaaataatgcat |
5332516 |
T |
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| Q |
210 |
ctgagtaaatcatttagtt |
228 |
Q |
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||||||||||||||||||| |
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| T |
5332515 |
ctgagtaaatcatttagtt |
5332497 |
T |
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