View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_high_78 (Length: 247)
Name: NF19009_high_78
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_78 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 37976025 - 37975800
Alignment:
| Q |
1 |
ttgtagatcaaaactttgcatttatattatttatttagagattctaggttccaattccactcatcacatgcatgcagcttggtgatataaaataaaaaag |
100 |
Q |
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| T |
37976025 |
ttgtagatcaaaactttgcatttatattatttatttagagattctaggttccacttacactcatcacatgca----gcttggtgatataaaataaaaaag |
37975930 |
T |
|
| Q |
101 |
aaggttatacctgtcccttgtatttaaaaggtgtttcatttttcagatttctctaaagaaaaaggaagaaaggtttgggagatttccattatagttatat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37975929 |
aaggttatacctgtcccttgtatttaaaaggtatttcatttttcagatttctctaaagaaaaaggaagaaaggtttgggagatttccattgtagttatat |
37975830 |
T |
|
| Q |
201 |
agttcttctgtgtccactaactattatatg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
37975829 |
agttcttctgtgtccactaactattatatg |
37975800 |
T |
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