View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_high_85 (Length: 235)
Name: NF19009_high_85
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_85 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33802979 - 33803199
Alignment:
| Q |
1 |
ttagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33802979 |
ttagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaa |
33803078 |
T |
|
| Q |
101 |
catctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaatagtcggatataaggaggatagtgaaatattatctctagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
33803079 |
catctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaatagtcggatataaggaggataatgacatattatctctagc |
33803178 |
T |
|
| Q |
201 |
cgagatggacgacacacttct |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33803179 |
cgagatggacgacacacttct |
33803199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33731600 - 33731820
Alignment:
| Q |
1 |
ttagcctgacacaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33731600 |
ttagcctgacacaactcatcattcctagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacagaattagcattactactatttcctacaa |
33731699 |
T |
|
| Q |
101 |
catctccacttctttgataatcggattctacaacaggtgcaacctcaatttgtcctccaatagtcggatataaggaggatagtgaaatattatctctagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
33731700 |
catctccacttctttgataatcggattctacaacaggtgcaacttcaatttgtcctccaatagtcagatataaggaggataatgacatattatctctagt |
33731799 |
T |
|
| Q |
201 |
cgagatggacgacacacttct |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33731800 |
cgagatggacgacacacttct |
33731820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 6126106 - 6125996
Alignment:
| Q |
11 |
acaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaacatctccact |
110 |
Q |
| |
|
||||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||| | |||| |
|
|
| T |
6126106 |
acaactcatcattcctagtaccaatagtaatggtgttaatttcatcgttgaatgacgaaatggaattcacattactattatttcctccaacaaatgcact |
6126007 |
T |
|
| Q |
111 |
tctttgataat |
121 |
Q |
| |
|
||||||||||| |
|
|
| T |
6126006 |
tctttgataat |
6125996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 6145525 - 6145414
Alignment:
| Q |
11 |
acaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaacatctccact |
110 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||| || |||||||||||||||||| |||||| |||||||| | |||||| ||||| ||||||| |
|
|
| T |
6145525 |
acaactcatcattcctagtaccaatagtagtggtgttagttccatcgttgaatgacgaaatggaattcacattactattgtttcctgcaacaactccact |
6145426 |
T |
|
| Q |
111 |
tctttgataatc |
122 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
6145425 |
tcttggataatc |
6145414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 6151945 - 6151818
Alignment:
| Q |
11 |
acaactcatcattcccagcaccagtagtagtggtgttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaacatctccact |
110 |
Q |
| |
|
||||||||||||| | || |||||||| ||||| ||||||| ||||| ||||||| |||| |||||| |||||||||| |||||| ||||| ||||||| |
|
|
| T |
6151945 |
acaactcatcatttctagtaccagtagcagtggggttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccact |
6151846 |
T |
|
| Q |
111 |
tctttgataatcggattctacaacaggt |
138 |
Q |
| |
|
||||||| |||| ||| || |||||||| |
|
|
| T |
6151845 |
tctttgaaaatcagatcctgcaacaggt |
6151818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 28755565 - 28755512
Alignment:
| Q |
168 |
atataaggaggatagtgaaatattatctctagccgagatggacgacacacttct |
221 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28755565 |
atataaggaggagaatgacatattatctctagccgagatggacgacacacttct |
28755512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 28755573 - 28755643
Alignment:
| Q |
151 |
tgtcctccaatagtcggatataaggaggatagtgaaatattatctctagccgagatggacgacacacttct |
221 |
Q |
| |
|
|||||||||||| | ||||||||| || | ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28755573 |
tgtcctccaatatcagaatataaggaagagaatgacatattatctctagccgagatggacgacacgcttct |
28755643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 32621632 - 32621665
Alignment:
| Q |
146 |
caatttgtcctccaatagtcggatataaggagga |
179 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
32621632 |
caatttgtcctccaatagttggatataaggagga |
32621665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 6138412 - 6138376
Alignment:
| Q |
60 |
gaatgacgaaacggaattagcattactactatttcct |
96 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
6138412 |
gaatgatgaaatggaattagcattactactatttcct |
6138376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University