View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_high_94 (Length: 210)
Name: NF19009_high_94
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_high_94 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 31648393 - 31648213
Alignment:
| Q |
19 |
aattaattaacaccttctataactagtaattagctaggctaaataaggtattaatggatatgaagaggaaaaagagggatatggccttttattcaacttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31648393 |
aattaattaacaccttctataactagtaactagctaggctaaataaggtattaatggatatgaagaggaaaaggagggatatggccttttattcaacttg |
31648294 |
T |
|
| Q |
119 |
ataaccttcctacttgcaaatttaaaaactgttcccatttggaagtatatagacaaaagttcctagtcaggttcatctcac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31648293 |
ttaaccttcctacttgcaaatttaaaaactgttcccatttggaagtatatagacaaaagttcctagtcaggttcatttcac |
31648213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 180
Target Start/End: Complemental strand, 31655360 - 31655254
Alignment:
| Q |
72 |
atggatatgaagag-gaaaaagagggatatggccttttattcaacttgataaccttcctacttgcaaatttaaaaactgttcccatttggaagtatatag |
170 |
Q |
| |
|
|||||||||||||| |||||||||| | | |||||||||||||||| || |||||||||||||||||||||| || |||||||||| ||||| ||| |
|
|
| T |
31655360 |
atggatatgaagagagaaaaagaggtgcacgaccttttattcaacttggta--cttcctacttgcaaatttaaaatttgatcccatttgg-agtatttag |
31655264 |
T |
|
| Q |
171 |
acaaaagttc |
180 |
Q |
| |
|
|||||||||| |
|
|
| T |
31655263 |
acaaaagttc |
31655254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University