View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_1 (Length: 918)
Name: NF19009_low_1
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 443 - 904
Target Start/End: Original strand, 34164546 - 34165007
Alignment:
| Q |
443 |
gtattcatgttccatgtgttgattatctgtcacagatacaagtaaatcgatgtggatgaatgtgccgatgtcaattctatttgtttgggctctgcgcatt |
542 |
Q |
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| T |
34164546 |
gtattcatgttccatgtgttgattatctgtcacagatacaagtaaatcgatgtggatgaatgtgccgatgtcaattctatttgtttgtgctctgcgcatt |
34164645 |
T |
|
| Q |
543 |
attgtaaataatgtggaatttcgttggaaggttaaacaacctagatcacatacatatttatcacatttggagaaaaaacagttgtctttgaatgatccgc |
642 |
Q |
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| T |
34164646 |
attgtaaataatgtggaatttcgttggaaggttaaacaacctagatcacatacatatttatcacatttggagaaaaaacagttgtctttgaatgatccgc |
34164745 |
T |
|
| Q |
643 |
gtctctctagtgcacctcccccggtaaagtggaagaggaaaattgattctcctgttgtggaggatgcaatggctgatttcattgataagattttgaagga |
742 |
Q |
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| T |
34164746 |
gtctctctagtgtacctcccccggtaaagtggaagaggaaaattgattctcctgttgtggaggatgcaatggctgatttcattgataagattttgaagga |
34164845 |
T |
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| Q |
743 |
tttcgtggttgatttgtggtactcggagattactccggatagggagtttcctgatcagatacgcgctataatcatggatgttcttgctgaaatatcagca |
842 |
Q |
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| T |
34164846 |
tttcgtggttgatttgtggtactcggagattactccggatagggagtttcctgatcagatacgcgctataatcatggatgttcttgctgaaatatcagca |
34164945 |
T |
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| Q |
843 |
agggttaaagagataaatcttgtcgacttgttgacaaggtatgttgcttttcctgtcctatg |
904 |
Q |
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| T |
34164946 |
agggttaaagagataaatcttgtcgacttgttgacaaggtatgctgcttttcctgtcctatg |
34165007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 126 - 391
Target Start/End: Original strand, 34164237 - 34164501
Alignment:
| Q |
126 |
ccttggtgcggcaaaaggttgttgatgatttgttacggtgttgttgtttgattcgacgatgaagaagaaacccatggagagtgtgaatgatctgatccaa |
225 |
Q |
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| T |
34164237 |
ccttggtgcggtaaaaggtttttgatgatttgttacggtgttgttgtttgattcaacgatgaagaagaaacccatggagagtgtgaatgatctgatccaa |
34164336 |
T |
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| Q |
226 |
gagtttaagctccgcactctttggtgggctctctctattttcgccgtttcttatttcctcactcgtaagtttcactttttgttgttgttggaaatttgaa |
325 |
Q |
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| T |
34164337 |
gagtttaagctccgcactctttggtgggctctctctattttcgccgtttcttatttcctcactcgtaagtttcacttttt-ttgttgtttgaaatttgaa |
34164435 |
T |
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| Q |
326 |
ttattagcttaagtttcatatattttgcttgatgataggttctagcataagaccatagtgtgtgta |
391 |
Q |
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| T |
34164436 |
ttattagcttaagtttcatatattttgcttgatgataggttctagcataagaccatagtgtgtgta |
34164501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 34164125 - 34164203
Alignment:
| Q |
14 |
aatacaaagaatattccattaatattatttttctgctcgataattcaattcaattccaggtattacataccgtttcttc |
92 |
Q |
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| T |
34164125 |
aatacaaagaatattccattaatattatttttctgctcgataattcaattcaattccaggtattacatactgtttcttc |
34164203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 672 - 894
Target Start/End: Original strand, 12406589 - 12406811
Alignment:
| Q |
672 |
tggaagaggaaaattgattctcctgttgtggaggatgcaatggctgatttcattgataagattttgaaggatttcgtggttgatttgtggtactcggaga |
771 |
Q |
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||||||| |||||||||||||||||| ||||||| ||| || |||||||| ||| ||| ||||||||||||||| | || ||||||| | || | |
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| T |
12406589 |
tggaagaagaaaattgattctcctgtggtggaggctgctttgaacgatttcatcgatttgatattgaaggatttcgtgataaatatgtggtatgcagaca |
12406688 |
T |
|
| Q |
772 |
ttactccggatagggagtttcctgatcagatacgcgctataatcatggatgttcttgctgaaatatcagcaagggttaaagagataaatcttgtcgactt |
871 |
Q |
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| T |
12406689 |
ttactcaagatggggagtttcctgagcaaatacgtgacttaatcatggacgctcttgctgaagtctcggtgagggttaaagagataaacattgttgactt |
12406788 |
T |
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| Q |
872 |
gttgacaaggtatgttgcttttc |
894 |
Q |
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| T |
12406789 |
gctcacagggtatattgtttttc |
12406811 |
T |
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