View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_12 (Length: 483)
Name: NF19009_low_12
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 47179255 - 47179498
Alignment:
| Q |
16 |
attaaatctgatctctatggaccattttgtaccattgataaaattataatatcaattatcaattattcaacatctatagcatttgagggactaaaatacc |
115 |
Q |
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| T |
47179255 |
attaaatctgatctctatggaccgttttgtaccattgataaaattata-----------------ttcaacatctatagcatttgagggactaaaatacc |
47179337 |
T |
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| Q |
116 |
tctcattacaatttcaaacaccaaaatgtttatttactcatctctctcctttctagagttgaacatgttcctaaaatggttttgttgaaaataacatacc |
215 |
Q |
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| T |
47179338 |
tctcattacaatttcaaacaccaaaatgtttatttactcatctctgtcctttctagagttgaacatgttcctaaaatggttttgttgaaaat-------- |
47179429 |
T |
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| Q |
216 |
agcaacaagaattaaagtcaaaatgtatgtttgtttcttcaataacattgatgtttgattacttgttcgagt |
287 |
Q |
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| T |
47179430 |
---aacaagaattaaagtcaaaatgtatgtttggttcttcaataacattgatgtttgattacttgttcgagt |
47179498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 358 - 477
Target Start/End: Original strand, 47179573 - 47179692
Alignment:
| Q |
358 |
atgttaaaatcaattatacatctctaaaatcgattttaacatcttaaattgaaaccaatcattcacaaactaatgactgataatggaaatctttgtcctc |
457 |
Q |
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| T |
47179573 |
atgttaaaatcaattatacatctctaaaatcaattttaacatcttaaattgaaaccaatcatacacaaactaatgactgataatggatatctttgtcctc |
47179672 |
T |
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| Q |
458 |
tagcaaaatgaactaccaaa |
477 |
Q |
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| T |
47179673 |
tagcaaaatgaactgccaaa |
47179692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 387
Target Start/End: Original strand, 34929139 - 34929167
Alignment:
| Q |
359 |
tgttaaaatcaattatacatctctaaaat |
387 |
Q |
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| T |
34929139 |
tgttaaaatcaattatacatctctaaaat |
34929167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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