View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_16 (Length: 450)
Name: NF19009_low_16
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 26644383 - 26643962
Alignment:
| Q |
18 |
gaacgtcagtttaaaactaattcacactgacagtgtgcatgttccttattctcatttagaaaatacaattacatttttatcaatttgagaaaattaaata |
117 |
Q |
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| T |
26644383 |
gaacgtcagtttaaaactaattcacactgccagtg--catgttccttattctcatttagaaaatacaattacatttttatcaatttgagaaaattaaata |
26644286 |
T |
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| Q |
118 |
agagtaacaacttttcctaaagttgtgaaattagtttatttttcatctatttattaggagttcaaaaggagtgtatacaataacaaaagatctaactctt |
217 |
Q |
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| T |
26644285 |
agagtaacaacttttcctaaagttgtgaaattagtttatttttcatctatttattaggagttcaaaaggagtgtatacaataacaaaagacctaactctt |
26644186 |
T |
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| Q |
218 |
taaacaagataattatcaaaatgttaagtttaattcttgtgtttagtgctggtggtttatgtattgtgttgtttttgttggggacttctgaggatgagag |
317 |
Q |
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| T |
26644185 |
taaacaagataattatcaaaatgttaagtttaattcttgtgtttggtgctggtggtttatgtattgtgttgtttttgttggggatttctgaggatgagag |
26644086 |
T |
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| Q |
318 |
gaagaaagttagttctgtttccattgagggtgttcctgctgctgttgatgcttttcggcaatcgttgatcatcgattaattgcttccatgatgatcatca |
417 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
26644085 |
gaagaaagttagttctgtttccattgaggatgttcctgctgctgttgatgcttttcggcaatcgttgatcatcgatgaattgcttccatgatgattatca |
26643986 |
T |
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| Q |
418 |
tatgatgctaaggttctctatatt |
441 |
Q |
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| T |
26643985 |
tatgatgctaaggttctctatatt |
26643962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 26659098 - 26658949
Alignment:
| Q |
77 |
aaaatacaattacatttttatcaatttgagaaaattaaataagagtaacaacttttcctaaagttgtgaaattagtttatttttcatctatttattagga |
176 |
Q |
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| T |
26659098 |
aaaatacaattacatttttatcaatttgagaaaattaaataagagtaacaacgtttcctaaagttgtgaaattagtttacttttcatctatttattagga |
26658999 |
T |
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| Q |
177 |
gttcaaaaggagtgtatacaataacaaaagatctaactctttaaacaaga |
226 |
Q |
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| T |
26658998 |
gttcagaaggagtgtatccaagaacaaaagacccaactctttaaacaaga |
26658949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 241 - 404
Target Start/End: Complemental strand, 26658887 - 26658724
Alignment:
| Q |
241 |
ttaagtttaattcttgtgtttagtgctggtggtttatgtattgtgttgtttttgttggggacttctgaggatgagaggaagaaagttagttctgtttcca |
340 |
Q |
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| T |
26658887 |
ttaagtttaattcttatgtttggtgctggtggtatatggattgcgttgtctttcttggtgacttccgaggagaagaggaagcgaggtagctctgtttcca |
26658788 |
T |
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| Q |
341 |
ttgagggtgttcctgctgctgttgatgcttttcggcaatcgttgatcatcgattaattgcttcc |
404 |
Q |
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| T |
26658787 |
tcgaggatgctcctgctgttgttgatgcctttcggaaatcgttgatcatggatgaattgcttcc |
26658724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 404
Target Start/End: Complemental strand, 26664944 - 26664888
Alignment:
| Q |
348 |
tgttcctgctgctgttgatgcttttcggcaatcgttgatcatcgattaattgcttcc |
404 |
Q |
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||||||||||| ||||||||| |||||| ||| ||||||||| ||| |||||||||| |
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| T |
26664944 |
tgttcctgctgttgttgatgcgtttcggaaattgttgatcatggatgaattgcttcc |
26664888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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