View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19009_low_17 (Length: 425)
Name: NF19009_low_17
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 49546951 - 49546551
Alignment:
| Q |
19 |
ccaaagtcattcactcccctccaaaatcacaaacaatgcctaa--gaataaatcatcataagnnnnnnncaa-gagactcccacattgtaatcattatgt |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
49546951 |
ccaaagccattcactcccctccaaaatcacaaacaatgcctaaaagaataaatcatcataacaaaaaaaaaaagagactcccacattgtaatcattatgt |
49546852 |
T |
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| Q |
116 |
caggattcctcatttgtccttttcttttaacagatcctcctcctaattcagttcatatannnnnnnnggctcattatccattaaacctaaggaagaaata |
215 |
Q |
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| T |
49546851 |
catgattcctcatttgtctttttcttttaacagatcctcctcctaattcagctcatattttttttttggctcattatccattaaacctaaagaagaaata |
49546752 |
T |
|
| Q |
216 |
ctatggaatgatggactggccaaccccatttatagcactttattccaatatatttttcaccccatactcattatattaggattctttattttccctgttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49546751 |
ctatggaatgatggactggccaaccccatttatagcactttattccaatatatttt-caccccatactcattatattaggattctttattttccctgttt |
49546653 |
T |
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| Q |
316 |
tccaactcagcatacttctcattcagtccatcttcttccatttatccatctcctgtgacccttgctatatctttctagaataaacatgagttgtggtcct |
415 |
Q |
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| T |
49546652 |
tccaactcagcatacttctcattcagtccatcttcttccatttatctatctcctgtgacccttgctatatctttctagaataaacatgagttgtggtcct |
49546553 |
T |
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| Q |
416 |
at |
417 |
Q |
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| T |
49546552 |
at |
49546551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 291 - 409
Target Start/End: Complemental strand, 49443753 - 49443632
Alignment:
| Q |
291 |
ttaggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttctt---ccatttatccatctcctgtgacccttgctatatct |
387 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||| |||||||| | ||| |||| ||||||||| ||||| |||| |||||||||| ||| |
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| T |
49443753 |
ttaggattctttattttcccttttttccaactcaacatacttttcattcagcctatcctctttttccatttatctatctcatgtgccccttgctatctct |
49443654 |
T |
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| Q |
388 |
ttctagaataaacatgagttgt |
409 |
Q |
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|||||||||||||||||||||| |
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| T |
49443653 |
ttctagaataaacatgagttgt |
49443632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 373 - 417
Target Start/End: Complemental strand, 47988551 - 47988507
Alignment:
| Q |
373 |
acccttgctatatctttctagaataaacatgagttgtggtcctat |
417 |
Q |
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| T |
47988551 |
acccttgctatctctttctaggataaacatgagttgtgatcctat |
47988507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 49443948 - 49443886
Alignment:
| Q |
108 |
cattatgtcaggattcctcatttgtccttttcttttaacagatcctcctcctaattcagttcat |
171 |
Q |
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| T |
49443948 |
cattatgttaggattcctcattt-tctttttcttccaacagatcctcctcctcattcagctcat |
49443886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 47872680 - 47872709
Alignment:
| Q |
388 |
ttctagaataaacatgagttgtggtcctat |
417 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
47872680 |
ttctagaataaacatgagttgtggtcctat |
47872709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 417
Target Start/End: Original strand, 14961990 - 14962116
Alignment:
| Q |
294 |
ggattctttattttccctgttttccaactcagcatacttctcattcagtccatcttc---ttccatttatccatctcctgtgacccttgctatatctttc |
390 |
Q |
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||||||||||||| |||| |||||| ||||||||||||||||||||| ||||| || | ||| ||||| |||| ||||| || ||||||| |||||| |
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| T |
14961990 |
ggattctttatttcccctattttcctactcagcatacttctcattcaacccatcctctcatgccacttatctatcttctgtgtcctttgctatctctttc |
14962089 |
T |
|
| Q |
391 |
tagaataaacatgagttgtggtcctat |
417 |
Q |
| |
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| |||||||| ||| ||||||||||| |
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| T |
14962090 |
tggaataaacttgacctgtggtcctat |
14962116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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