View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19009_low_18 (Length: 423)
Name: NF19009_low_18
Description: NF19009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19009_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 152 - 414
Target Start/End: Complemental strand, 3804829 - 3804567
Alignment:
| Q |
152 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagaatatcaatagccacaataaaacctatgtattcttgtgaagagggagagacgtgt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3804829 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagaatatcaatagccacaataaaacctatgtattcttgtgaagagggagagacgtgt |
3804730 |
T |
|
| Q |
252 |
ttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtaggagtagtttggtacaagga |
351 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || |||||| |
|
|
| T |
3804729 |
ttgtgaggcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctggaatgtaaggtagaagtagtttagtccaagga |
3804630 |
T |
|
| Q |
352 |
tatttttggaatatcaactagtattttaaaattattaatagaaaagatacctttccttggtct |
414 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3804629 |
tatttttgaaatatcaactagtattttaaaattattaatagaaaagatacctttctttggtct |
3804567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 222 - 417
Target Start/End: Original strand, 27149785 - 27149980
Alignment:
| Q |
222 |
atgtattcttgtgaagagggagagacgtgtttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctaga |
321 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27149785 |
atgtattcttgtgaagagggagaggcgtgtttgtgaggcttgaattggtactcatacaatagctttaatgatagaattacattaattgtaggcagctgta |
27149884 |
T |
|
| Q |
322 |
atgtaaggtaggagtagtttggtacaaggatatttttggaatatcaactagtattttaaaattattaatagaaaagatacctttccttggtctgtg |
417 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
27149885 |
atgtaaggtaggagtagtttagtccaaggatatttttggaatatcaactagtattttaaaattattaatagaaaaaatgcctttccttggtctgtg |
27149980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 222 - 417
Target Start/End: Original strand, 8435257 - 8435452
Alignment:
| Q |
222 |
atgtattcttgtgaagagggagagacgtgtttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctaga |
321 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8435257 |
atgtattcttgtgaagagggagaagcatgtttgtgaggcttgaattggtactcatacaatagctttaatgatagaattacattaattgtaggcagctgta |
8435356 |
T |
|
| Q |
322 |
atgtaaggtaggagtagtttggtacaaggatatttttggaatatcaactagtattttaaaattattaatagaaaagatacctttccttggtctgtg |
417 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||| |
|
|
| T |
8435357 |
atgtaaggtaggagtagtttagtccaaggatatttttggaatatcaactagtattttaaaattattaatagaaaaaatacatttctttagtctgtg |
8435452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 152 - 413
Target Start/End: Original strand, 5165109 - 5165378
Alignment:
| Q |
152 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgag-------aatatcaatagccaca----------ataaaacctatgtattcttgtg |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
5165109 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagctgtgagaatatcaatagccacattaaaccagaataaaactgatgtattcttgtg |
5165208 |
T |
|
| Q |
235 |
aagagggagagacgtgtttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtagga |
334 |
Q |
| |
|
|||||| |||| |||||||||| ||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5165209 |
aagagg-agaggtgtgtttgtgaggcttgaattgatactcatacaatagctttaatgatagaattacattaattgtaggcag--------taaggtagga |
5165299 |
T |
|
| Q |
335 |
gtagtttggtacaaggatatttttggaatatcaactagtattttaaaattattaatagaaaagatacctttccttggtc |
413 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
5165300 |
gtagtttagtccaaggatatttttggaatatcaactagtattttaaaattattaatagaaaaaatacatttccttggtc |
5165378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3804981 - 3804895
Alignment:
| Q |
1 |
agaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgtttaaacttcatttctactct |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3804981 |
agaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactagatgtttaaacttcatttctactct |
3804895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 5164957 - 5165043
Alignment:
| Q |
1 |
agaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgtttaaacttcatttctactct |
87 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5164957 |
agaggcatttttaagtatggctgaaagttcatacaaagctctctttatatagagaatgacgggatgtttaaacttcatttctactct |
5165043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 8435077 - 8435156
Alignment:
| Q |
8 |
tttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgtttaaacttcatttctactct |
87 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8435077 |
tttttaagtatggctgaaagttcatacaaagctctctttatatagagaatgactggatgtttaaacttcatttctactct |
8435156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 185
Target Start/End: Original strand, 8435222 - 8435255
Alignment:
| Q |
152 |
gtggtgggagtttgcctacttttttcaatttgaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
8435222 |
gtggtgggagtttgcctacttttttcaatttgaa |
8435255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 152 - 417
Target Start/End: Original strand, 31742590 - 31742864
Alignment:
| Q |
152 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgag-------aatatcaatagccaca----------ataaaacctatgtattcttgtg |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
31742590 |
gtggtgggagtttgcctacttttttcaatttgaaatccaaatgagctgtgagaatatcaatagccacattaaaccataataaaaccgatgtattcttgtg |
31742689 |
T |
|
| Q |
235 |
aagagggagagacgtgtttgtgatgcttggattggaactcatgcaatagctttaatgatagaattacattaattgtaggcagctagaatgtaaggtagga |
334 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
31742690 |
aagagggagaggcgtgtttgtgaggcttgaattggtactcatacaatagctttaatgatagaattacattaattgtaggc--------ggtaaggaagga |
31742781 |
T |
|
| Q |
335 |
gtagtttggtacaaggatatttttggaatatcaactagtattttaaaattattaatagaaaagatacctttccttggtctgtg |
417 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
31742782 |
gtagtttagtccaaggatatttttggaatatcaactagtattttaaaattattaatagaaaaaatacattttcttggtctgtg |
31742864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31742438 - 31742524
Alignment:
| Q |
1 |
agaggcatttttaactatggctgaaagttcatacaaagctctttttatatagagaatgactggatgtttaaacttcatttctactct |
87 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31742438 |
agaggcatttttaagtatggctgaaagttcatacaaagctctctttatatagagaatgactggatggttaaacttcatttctactct |
31742524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University